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    DHCR7 7-dehydrocholesterol reductase [ Homo sapiens ]

    Gene ID: 1717, updated on 12-May-2012

    Summary

    Official Symbol
    DHCR7provided by HGNC
    Official Full Name
    7-dehydrocholesterol reductaseprovided by HGNC
    Primary source
    HGNC:2860
    See related
    Ensembl:ENSG00000172893; HPRD:04174; MIM:602858; Vega:OTTHUMG00000167346
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SLOS
    Summary
    This gene encodes an enzyme that removes the C(7-8) double bond in the B ring of sterols and catalyzes the conversion of 7-dehydrocholesterol to cholesterol. This gene is ubiquitously expressed and its transmembrane protein localizes to the endoplasmic reticulum membrane and nuclear outer membrane. Mutations in this gene cause Smith-Lemli-Opitz syndrome (SLOS); a syndrome that is metabolically characterized by reduced serum cholesterol levels and elevated serum 7-dehydrocholesterol levels and phenotypically characterized by mental retardation, facial dysmorphism, syndactyly of second and third toes, and holoprosencephaly in severe cases to minimal physical abnormalities and near-normal intelligence in mild cases. Alternative splicing results in multiple transcript variants that encode the same protein.[provided by RefSeq, Aug 2009]

    Genomic context

    Location :
    11q13.4
    Sequence :
    Chromosome: 11; NC_000011.9 (71145457..71159477, complement)
    See DHCR7 in Epigenomics, MapViewer

    Chromosome 11 - NC_000011.9Genomic Context describing neighboring genes Neighboring gene SH3 and multiple ankyrin repeat domains 2 Neighboring gene SHANK2 antisense RNA 3 (non-protein coding) Neighboring gene microRNA 3664 Neighboring gene NAD synthetase 1 Neighboring gene S100 calcium binding protein A11 pseudogene 3

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Common genetic determinants of vitamin D insufficiency: a genome-wide association study.

    Smith-Lemli-Opitz syndrome

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Smith-Lemli-Opitz syndrome (SLOS) is a congenital multiple anomaly syndrome caused by an abnormality in cholesterol metabolism resulting from deficiency of the enzyme 7-dehydrocholesterol (7-DHC) reductase. It is characterized by prenatal and postnatal growth retardation, microcephaly, moderate to severe intellectual disability, and multiple major and minor malformations. The malformations include distinctive facial features, cleft palate, cardiac defects, underdeveloped external genitalia in males, postaxial polydactyly, and 2-3 syndactyly of the toes. The clinical spectrum is wide and individuals have been described with normal development and only minor malformations.
    Diagnosis Testing
    The diagnosis of SLOS relies on clinical suspicion and detection of elevated serum concentration of 7-DHC. Although serum concentration of cholesterol is usually low, it may be in the normal range in approximately 10% of affected individuals, making it an unreliable test for screening and diagnosis. DHCR7 is the only gene in which mutation is known to cause SLOS. Sequence analysis of DHCR7 detects approximately 96% of known mutations.
    Genetic Counseling
    SLOS is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier detection is possible if the disease-causing mutations in the family are known. Prenatal testing for pregnancies at risk is possible using biochemical testing or molecular genetic testing if the disease-causing mutations in the family are known.
    References

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:108063 BioGRID:119378 ACP6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108063 BioGRID:110180 FADS1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108063 BioGRID:110772 NDN    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108063 BioGRID:108193 TOR1A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108063 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    7-dehydrocholesterol reductase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    blood vessel development IEA
    Inferred from Electronic Annotation
    more info
     
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    cholesterol biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cholesterol biosynthetic process TAS
    Traceable Author Statement
    more info
     
    lung development IEA
    Inferred from Electronic Annotation
    more info
     
    multicellular organism growth IEA
    Inferred from Electronic Annotation
    more info
     
    post-embryonic development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of cholesterol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endoplasmic reticulum membrane TAS
    Traceable Author Statement
    more info
     
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    microsome IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear outer membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    7-dehydrocholesterol reductase
    Names
    7-dehydrocholesterol reductase
    7-DHC reductase
    sterol delta-7-reductase
    putative sterol reductase SR-2
    delta-7-dehydrocholesterol reductase
    NP_001157289.1
    NP_001351.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_012655.2 RefSeqGene

      Range
      5001..19021
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001163817.1NP_001157289.1  7-dehydrocholesterol reductase

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AI888720, AP002387, DA502590
      Consensus CDS
      CCDS8200.1
      UniProtKB/Swiss-Prot
      Q9UBM7
      Related
      ENSP00000384739, OTTHUMP00000235751, ENST00000407721, OTTHUMT00000394242
      Conserved Domains (1) summary
      cl00763
      Location:93475
      Blast Score: 691
      PEMT; Phospholipid methyltransferase
    2. NM_001360.2NP_001351.2  7-dehydrocholesterol reductase

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AF062481, AP002387, BU848891, DA502590
      Consensus CDS
      CCDS8200.1
      UniProtKB/Swiss-Prot
      Q9UBM7
      Related
      ENSP00000347717, OTTHUMP00000235752, ENST00000355527, OTTHUMT00000394243
      Conserved Domains (1) summary
      cl00763
      Location:93475
      Blast Score: 691
      PEMT; Phospholipid methyltransferase

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000011.9 Reference GRCh37.p5 Primary Assembly

      Range
      71145457..71159477, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000143.1 Alternate HuRef

      Range
      67439049..67453070, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AF110060.1 AAD24762.1
    genomic AP002387.4 (56508..70449) None
    genomic CH471076.1 EAW74788.1
      EAW74789.1
      EAW74790.1
      EAW74791.1
    mRNA AF034544.1 AAC05086.1
    mRNA AF062481.1 AAC18345.1
    mRNA AF067127.1 AAD02816.1
    mRNA AF096305.1 AAD09766.1
    mRNA AI888720.1 None
    mRNA AK289497.1 BAF82186.1
    mRNA AK303881.1 BAG64817.1
    mRNA AK309625.1 None
    mRNA AK312775.1 BAG35639.1
    mRNA BC000054.2 AAH00054.1
    mRNA BU848891.1 None
    mRNA DA502590.1 None
    other-genetic DQ891827.2 ABM82753.1
    other-genetic DQ895014.2 ABM85940.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9UBM7.1 GenPept UniProtKB/Swiss-Prot:Q9UBM7

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