Format

Send to:

Choose Destination

Atp5b ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide [ Rattus norvegicus (Norway rat) ]

Gene ID: 171374, updated on 8-May-2016
Official Symbol
Atp5bprovided by RGD
Official Full Name
ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptideprovided by RGD
Primary source
RGD:621368
See related
Ensembl:ENSRNOG00000002840
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Summary
beta subunit of rat liver ATP synthase [RGD, Feb 2006]
Orthologs
Location:
7q11
Exon count:
10
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (2504708..2511748)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (2484095..2490338)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene nascent polypeptide-associated complex alpha subunit Neighboring gene prostaglandin E synthase 3 Neighboring gene basic salivary proline-rich protein 2-like Neighboring gene bromodomain adjacent to zinc finger domain, 2A Neighboring gene RNA binding motif, single stranded interacting protein 2

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
ATP binding IDA
Inferred from Direct Assay
more info
PubMed 
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATP binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
ATPase activity IDA
Inferred from Direct Assay
more info
PubMed 
ATPase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
contributes_to ATPase activity ISO
Inferred from Sequence Orthology
more info
 
MHC class I protein binding IEA
Inferred from Electronic Annotation
more info
 
MHC class I protein binding ISO
Inferred from Sequence Orthology
more info
 
calcium ion binding IDA
Inferred from Direct Assay
more info
PubMed 
lipoprotein particle receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 
proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 
proton-transporting ATPase activity, rotational mechanism ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
ATP biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
ATP hydrolysis coupled proton transport IEA
Inferred from Electronic Annotation
more info
 
ATP metabolic process IDA
Inferred from Direct Assay
more info
PubMed 
ATP synthesis coupled proton transport IEA
Inferred from Electronic Annotation
more info
 
angiogenesis IEA
Inferred from Electronic Annotation
more info
 
angiogenesis ISO
Inferred from Sequence Orthology
more info
 
lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
lipid metabolic process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell adhesion involved in substrate-bound cell migration IEA
Inferred from Electronic Annotation
more info
 
negative regulation of cell adhesion involved in substrate-bound cell migration ISO
Inferred from Sequence Orthology
more info
 
osteoblast differentiation IEA
Inferred from Electronic Annotation
more info
 
osteoblast differentiation ISO
Inferred from Sequence Orthology
more info
 
proton transport ISO
Inferred from Sequence Orthology
more info
 
receptor-mediated endocytosis IDA
Inferred from Direct Assay
more info
PubMed 
regulation of intracellular pH IEA
Inferred from Electronic Annotation
more info
 
regulation of intracellular pH ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cell surface IEA
Inferred from Electronic Annotation
more info
 
cell surface ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome IEA
Inferred from Electronic Annotation
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrial inner membrane IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrial membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrial nucleoid IEA
Inferred from Electronic Annotation
more info
 
mitochondrial nucleoid ISO
Inferred from Sequence Orthology
more info
 
mitochondrial proton-transporting ATP synthase complex IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial proton-transporting ATP synthase complex IEA
Inferred from Electronic Annotation
more info
 
mitochondrial proton-transporting ATP synthase complex ISO
Inferred from Sequence Orthology
more info
 
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
myelin sheath IEA
Inferred from Electronic Annotation
more info
 
myelin sheath ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
proton-transporting ATP synthase complex, catalytic core F(1) IDA
Inferred from Direct Assay
more info
PubMed 
proton-transporting ATP synthase complex, catalytic core F(1) IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
ATP synthase subunit beta, mitochondrial
Names
ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mitochondrial ATP synthase beta subunit
NP_599191.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134364.1NP_599191.1  ATP synthase subunit beta, mitochondrial precursor

    See identical proteins and their annotated locations for NP_599191.1

    Status: VALIDATED

    Source sequence(s)
    M19044, M25301, M57634
    UniProtKB/Swiss-Prot
    P10719
    Related
    ENSRNOP00000003965, ENSRNOT00000003965
    Conserved Domains (4) summary
    PRK09280
    Location:58524
    PRK09280; F0F1 ATP synthase subunit beta; Validated
    cd01133
    Location:131410
    F1-ATPase_beta; F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a ...
    pfam00306
    Location:418525
    ATP-synt_ab_C; ATP synthase alpha/beta chain, C terminal domain
    pfam02874
    Location:63129
    ATP-synt_ab_N; ATP synthase alpha/beta family, beta-barrel domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

    Range
    2504708..2511748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000075.1 Alternate Rn_Celera

    Range
    394648..401125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)