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Gasu_28920 formamidopyrimidine-DNA glycosylase isoform 1;formamidopyrimidine-DNA glycosylase isoform 2 [ Galdieria sulphuraria ]

Gene ID: 17088447, updated on 6-Jan-2024

Summary

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Gene symbol
Gasu_28920
Gene description
formamidopyrimidine-DNA glycosylase isoform 1;formamidopyrimidine-DNA glycosylase isoform 2
Locus tag
Gasu_28920
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Galdieria sulphuraria (strain: 074W)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Galdieriales; Galdieriaceae; Galdieria
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Genomic context

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Location:
chromosome: Unknown
Exon count:
2

NW_005178453.1Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase Neighboring gene uncharacterized protein Neighboring gene serine/threonine protein phosphatase Neighboring gene DNA damage-inducible protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005178453.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Schönknecht G, et al. Science, 2013 Mar 8. PMID 23471408

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
formamidopyrimidine-DNA glycosylase isoform 1;formamidopyrimidine-DNA glycosylase isoform 2
XP_005706188.1
  • alternatively spliced
XP_005706189.1
  • alternatively spliced

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005178453.1 Reference assembly

    Range
    32221..33553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005706131.1 → XP_005706188.1  formamidopyrimidine-DNA glycosylase isoform 2 [Galdieria sulphuraria]

    See identical proteins and their annotated locations for XP_005706188.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M2Y165
    Conserved Domains (3) summary
    TIGR00577
    Location:2 → 287
    fpg; DNA-formamidopyrimidine glycosylase
    pfam06831
    Location:157 → 244
    H2TH; Formamidopyrimidine-DNA glycosylase H2TH domain
    cl03119
    Location:1 → 141
    FpgNei_N; N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases

  2. XM_005706132.1 → XP_005706189.1  formamidopyrimidine-DNA glycosylase isoform 1 [Galdieria sulphuraria]

    See identical proteins and their annotated locations for XP_005706189.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M2Y1H7
    Conserved Domains (3) summary
    TIGR00577
    Location:2 → 261
    fpg; DNA-formamidopyrimidine glycosylase
    pfam01149
    Location:2 → 105
    Fapy_DNA_glyco; Formamidopyrimidine-DNA glycosylase N-terminal domain
    pfam06831
    Location:131 → 218
    H2TH; Formamidopyrimidine-DNA glycosylase H2TH domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases