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Ly96 lymphocyte antigen 96 [ Mus musculus (house mouse) ]

Gene ID: 17087, updated on 28-May-2016
Official Symbol
Ly96provided by MGI
Official Full Name
lymphocyte antigen 96provided by MGI
Primary source
MGI:MGI:1341909
See related
Ensembl:ENSMUSG00000025779 Vega:OTTMUSG00000048080
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MD2; MD-2; ESOP-1
Orthologs
Location:
1; 1 A3
Exon count:
6
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 1 NC_000067.6 (16687851..16709608)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (16678537..16699686)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene isopentenyl-diphosphate delta isomerase pseudogene Neighboring gene transmembrane protein 70 Neighboring gene predicted gene, 31863 Neighboring gene TOX high mobility group box family member 4 pseudogene Neighboring gene junctophilin 1

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC151162

Gene Ontology Provided by MGI

Function Evidence Code Pubs
lipopolysaccharide receptor activity ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 
intrinsic component of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
lipopolysaccharide receptor complex IDA
Inferred from Direct Assay
more info
PubMed 
lipopolysaccharide receptor complex ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
lymphocyte antigen 96
Names
ly-96
myeloid differentiation factor-2
myeloid differentiation protein-2
protein MD-2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159711.1NP_001153183.1  lymphocyte antigen 96 isoform B precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 1. The resulting isoform (B) has the same N- and C-termini but is shorter compared to isoform A.
    Source sequence(s)
    AB018550, AK019283, AY641431
    Consensus CDS
    CCDS78550.1
    UniProtKB/Swiss-Prot
    Q9JHF9
    UniProtKB/TrEMBL
    A0A087WQZ9, Q64HC9
    Related
    ENSMUSP00000140411, OTTMUSP00000067436, ENSMUST00000190366, OTTMUST00000123540
    Conserved Domains (1) summary
    cl00274
    Location:23135
    ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...
  2. NM_016923.2NP_058619.1  lymphocyte antigen 96 isoform A precursor

    See identical proteins and their annotated locations for NP_058619.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (A).
    Source sequence(s)
    AB018550, AK019283
    Consensus CDS
    CCDS14832.1
    UniProtKB/Swiss-Prot
    Q9JHF9
    UniProtKB/TrEMBL
    Q14AM4
    Related
    ENSMUSP00000026881, OTTMUSP00000067435, ENSMUST00000026881, OTTMUST00000123539
    Conserved Domains (1) summary
    cl00274
    Location:23153
    ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000067.6 Reference GRCm38.p3 C57BL/6J

    Range
    16687851..16709608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006495456.2XP_006495519.1  

    See identical proteins and their annotated locations for XP_006495519.1

    UniProtKB/Swiss-Prot
    Q9JHF9
    UniProtKB/TrEMBL
    Q14AM4
    Conserved Domains (1) summary
    cl00274
    Location:23153
    ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...

Alternate Mm_Celera

Genomic

  1. AC_000023.1 Alternate Mm_Celera

    Range
    16621307..16642544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)