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Ppargc1b peroxisome proliferative activated receptor, gamma, coactivator 1 beta [ Mus musculus (house mouse) ]

Gene ID: 170826, updated on 21-May-2016
Official Symbol
Ppargc1bprovided by MGI
Official Full Name
peroxisome proliferative activated receptor, gamma, coactivator 1 betaprovided by MGI
Primary source
MGI:MGI:2444934
See related
Ensembl:ENSMUSG00000033871 Vega:OTTMUSG00000024012
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Perc; 4631412G21Rik
Orthologs
Location:
18; 18 E1
Exon count:
13
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 18 NC_000084.6 (61291445..61401462, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (61457790..61560085, complement)

Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 26 (sulfate transporter), member 2 Neighboring gene phosphodiesterase 6A, cGMP-specific, rod, alpha Neighboring gene ribosomal protein S2, pseudogene 10 Neighboring gene microRNA 378a Neighboring gene predicted gene, 41746 Neighboring gene predicted gene 8755 Neighboring gene RIKEN cDNA A530050N04 gene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
AF-2 domain binding ISO
Inferred from Sequence Orthology
more info
 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II transcription cofactor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
RNA polymerase II transcription cofactor activity ISO
Inferred from Sequence Orthology
more info
 
estrogen receptor binding ISO
Inferred from Sequence Orthology
more info
 
ligand-dependent nuclear receptor transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
ligand-dependent nuclear receptor transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
receptor activator activity ISO
Inferred from Sequence Orthology
more info
 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
actin filament organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
bone trabecula formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
cellular response to reactive oxygen species IDA
Inferred from Direct Assay
more info
PubMed 
intracellular estrogen receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription, DNA-templated IMP
Inferred from Mutant Phenotype
more info
PubMed 
ossification IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of alkaline phosphatase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of bone resorption IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of osteoclast differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of phosphorylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of sequence-specific DNA binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
positive regulation of transcription from RNA polymerase II promoter IBA
Inferred from Biological aspect of Ancestor
more info
 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription, DNA-templated IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
transcription from mitochondrial promoter IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
mediator complex ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
peroxisome proliferator-activated receptor gamma coactivator 1-beta
Names
ERR ligand 1
PGC-1-beta
PGC-1beta
PGC-1beta/ERRL1
PPAR gamma coactivator-1beta protein
PPAR-gamma coactivator 1-beta
PPARGC-1-beta
peroxisome proliferator-activated receptor gamma coactivator 1 beta

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133249.2NP_573512.1  peroxisome proliferator-activated receptor gamma coactivator 1-beta

    See identical proteins and their annotated locations for NP_573512.1

    Status: PROVISIONAL

    Source sequence(s)
    AC116595, AC121903
    Consensus CDS
    CCDS29284.1
    UniProtKB/Swiss-Prot
    Q8VHJ7
    Related
    ENSMUSP00000074771, OTTMUSP00000028482, ENSMUST00000075299, OTTMUST00000058693
    Conserved Domains (2) summary
    smart00360
    Location:894958
    RRM; RNA recognition motif
    cd12356
    Location:891970
    RRM_PPARGC1B; RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator 1-beta (PGC-1-beta) and similar proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000084.6 Reference GRCm38.p3 C57BL/6J

    Range
    61291445..61401462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006525698.2XP_006525761.1  

    Conserved Domains (2) summary
    smart00360
    Location:926990
    RRM; RNA recognition motif
    cd12356
    Location:9231002
    RRM_PPARGC1B; RNA recognition motif in peroxisome proliferator-activated receptor gamma coactivator 1-beta (PGC-1-beta) and similar proteins

Alternate Mm_Celera

Genomic

  1. AC_000040.1 Alternate Mm_Celera

    Range
    62581981..62683996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)