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COCSUDRAFT_52173 PEPCase 1 [ Coccomyxa subellipsoidea C-169 ]

Gene ID: 17045474, updated on 28-Dec-2023

Summary

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Gene symbol
COCSUDRAFT_52173
Gene description
PEPCase 1
Locus tag
COCSUDRAFT_52173
Gene type
protein coding
RNA name
PEPCase 1
RefSeq status
PROVISIONAL
Organism
Coccomyxa subellipsoidea C-169 (strain: C-169)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Coccomyxaceae; Coccomyxa
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Genomic context

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Exon count:
20

NW_005178042.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene WD40 repeat-like protein Neighboring gene hypothetical protein Neighboring gene N-terminal nucleophile aminohydrolase Neighboring gene alpha/beta-hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005178042.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Blanc G, et al. Genome Biol, 2012 May 25. PMID 22630137, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphoenolpyruvate carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbon fixation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
PEPCase 1
XP_005652003.1
  • hypothetical protein Phosphoenolpyruvate carboxylase 1. PEP carboxylase 1. PEPC 1.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005178042.1 Reference assembly

    Range
    2246329..2255972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005651946.1 → XP_005652003.1  PEPCase 1 [Coccomyxa subellipsoidea C-169]

    See identical proteins and their annotated locations for XP_005652003.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    I0Z9Z0
    Conserved Domains (2) summary
    COG2352
    Location:35 → 959
    Ppc; Phosphoenolpyruvate carboxylase [Energy production and conversion]
    pfam00311
    Location:141 → 959
    PEPcase; Phosphoenolpyruvate carboxylase
Nucleotide Protein
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