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Ldhc lactate dehydrogenase C [ Mus musculus (house mouse) ]

Gene ID: 16833, updated on 8-May-2016
Official Symbol
Ldhcprovided by MGI
Official Full Name
lactate dehydrogenase Cprovided by MGI
Primary source
MGI:MGI:96764
See related
Ensembl:ENSMUSG00000030851 Vega:OTTMUSG00000027259
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ldh3; Ldh-3; Ldh-x; Ldhc4; LDH-C4
Location:
7 B4; 7 30.6 cM
Exon count:
10
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 7 NC_000073.6 (46861263..46878142)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (54116633..54133512)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene predicted gene 5331 Neighboring gene lactate dehydrogenase A Neighboring gene predicted gene, 39011 Neighboring gene tumor susceptibility gene 101 Neighboring gene UEV and lactate/malate dehyrogenase domains Neighboring gene predicted gene, 39012

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
L-lactate dehydrogenase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
L-lactate dehydrogenase activity ISO
Inferred from Sequence Orthology
more info
 
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
ATP biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 
lactate biosynthetic process from pyruvate IDA
Inferred from Direct Assay
more info
PubMed 
lactate oxidation IDA
Inferred from Direct Assay
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
pyruvate metabolic process IDA
Inferred from Direct Assay
more info
PubMed 
sperm motility IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cilium IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
motile cilium IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
L-lactate dehydrogenase C chain
Names
LDH testis subunit
LDH-C
lactate dehydrogenase 3, C chain, sperm specific
lactate dehydrogenase-X
NP_038608.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013580.4NP_038608.1  L-lactate dehydrogenase C chain

    See identical proteins and their annotated locations for NP_038608.1

    Status: PROVISIONAL

    Source sequence(s)
    AC090123
    Consensus CDS
    CCDS21290.1
    UniProtKB/Swiss-Prot
    P00342
    UniProtKB/TrEMBL
    Q548Z6
    Related
    ENSMUSP00000014545, OTTMUSP00000033907, ENSMUST00000014545, OTTMUST00000067400
    Conserved Domains (2) summary
    cd05293
    Location:19329
    LDH_1; A subgroup of L-lactate dehydrogenases
    TIGR01771
    Location:25325
    L-LDH-NAD; L-lactate dehydrogenase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p3 C57BL/6J

    Range
    46861263..46878142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006540679.1XP_006540742.1  

    See identical proteins and their annotated locations for XP_006540742.1

    UniProtKB/Swiss-Prot
    P00342
    UniProtKB/TrEMBL
    Q548Z6
    Conserved Domains (2) summary
    cd05293
    Location:19329
    LDH_1; A subgroup of L-lactate dehydrogenases
    TIGR01771
    Location:25325
    L-LDH-NAD; L-lactate dehydrogenase
  2. XM_006540680.1XP_006540743.1  

    See identical proteins and their annotated locations for XP_006540743.1

    UniProtKB/Swiss-Prot
    P00342
    UniProtKB/TrEMBL
    Q548Z6
    Conserved Domains (2) summary
    cd05293
    Location:19329
    LDH_1; A subgroup of L-lactate dehydrogenases
    TIGR01771
    Location:25325
    L-LDH-NAD; L-lactate dehydrogenase
  3. XM_006540681.1XP_006540744.1  

    See identical proteins and their annotated locations for XP_006540744.1

    UniProtKB/Swiss-Prot
    P00342
    UniProtKB/TrEMBL
    Q548Z6
    Conserved Domains (2) summary
    cd05293
    Location:19329
    LDH_1; A subgroup of L-lactate dehydrogenases
    TIGR01771
    Location:25325
    L-LDH-NAD; L-lactate dehydrogenase

Alternate Mm_Celera

Genomic

  1. AC_000029.1 Alternate Mm_Celera

    Range
    42341209..42358089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)