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Ktn1 kinectin 1 [ Mus musculus (house mouse) ]

Gene ID: 16709, updated on 8-May-2016
Official Symbol
Ktn1provided by MGI
Official Full Name
kinectin 1provided by MGI
Primary source
MGI:MGI:109153
See related
Ensembl:ENSMUSG00000021843 Vega:OTTMUSG00000045014
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
Location:
14; 14 C2
Exon count:
45
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 14 NC_000080.6 (47648453..47736564)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (48283431..48356239)

Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene autophagy related 14 Neighboring gene small nuclear ribonucleoprotein polypeptide F pseudogene Neighboring gene RIKEN cDNA 4930538L07 gene Neighboring gene predicted gene, 41148

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
kinesin binding TAS
Traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
microtubule-based movement TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001293635.1NP_001280564.1  kinectin isoform 2

    See identical proteins and their annotated locations for NP_001280564.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and lacks two in-frame exons in the 3' coding region, compared to variant 1. The encoded protein (isoform 2) is shorter, compared to isoform 1.
    Source sequence(s)
    AK040200, BC075697, CD363975, CT009515
    Consensus CDS
    CCDS79305.1
    UniProtKB/Swiss-Prot
    Q61595
    UniProtKB/TrEMBL
    A0A087WQ25
    Related
    ENSMUSP00000140011, OTTMUSP00000066040, ENSMUST00000190252, OTTMUST00000118303
    Conserved Domains (1) summary
    TIGR02168
    Location:4831216
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  2. NM_001293636.1NP_001280565.1  kinectin isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and has multiple differences in the coding region, compared to variant 1. The encoded protein (isoform 3) is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK040200, BC075697, CD363975, CO431187
    UniProtKB/Swiss-Prot
    Q61595
    Conserved Domains (1) summary
    TIGR02168
    Location:2861018
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  3. NM_008477.2NP_032503.2  kinectin isoform 1

    See identical proteins and their annotated locations for NP_032503.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AK040200, BC046994, BC075697, DT913164, L43326
    Consensus CDS
    CCDS36900.1
    UniProtKB/Swiss-Prot
    Q61595
    UniProtKB/TrEMBL
    F8VQC7
    Related
    ENSMUSP00000022391, ENSMUST00000022391
    Conserved Domains (1) summary
    TIGR02168
    Location:4831273
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000080.6 Reference GRCm38.p3 C57BL/6J

    Range
    47648453..47736564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006518627.2XP_006518690.1  

    See identical proteins and their annotated locations for XP_006518690.1

    UniProtKB/TrEMBL
    F8VQC7
    Conserved Domains (1) summary
    TIGR02168
    Location:4831273
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  2. XM_011244973.1XP_011243275.1  

    See identical proteins and their annotated locations for XP_011243275.1

    UniProtKB/TrEMBL
    F8VQC7
    Conserved Domains (1) summary
    TIGR02168
    Location:4831273
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  3. XM_011244972.1XP_011243274.1  

    See identical proteins and their annotated locations for XP_011243274.1

    UniProtKB/TrEMBL
    F8VQC7
    Conserved Domains (1) summary
    TIGR02168
    Location:4831273
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  4. XM_006518629.2XP_006518692.1  

    See identical proteins and their annotated locations for XP_006518692.1

    UniProtKB/TrEMBL
    F8VQC7
    Conserved Domains (1) summary
    TIGR02168
    Location:4831273
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  5. XM_006518628.2XP_006518691.1  

    See identical proteins and their annotated locations for XP_006518691.1

    UniProtKB/TrEMBL
    F8VQC7
    Conserved Domains (1) summary
    TIGR02168
    Location:4831273
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  6. XM_006518632.2XP_006518695.1  

    Conserved Domains (2) summary
    pfam03532
    Location:9891178
    OMS28_porin; OMS28 porin
    TIGR02168
    Location:4831273
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  7. XM_006518634.2XP_006518697.1  

    Conserved Domains (1) summary
    TIGR02168
    Location:4831249
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  8. XM_006518638.2XP_006518701.1  

    Conserved Domains (1) summary
    TIGR02168
    Location:4831244
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  9. XM_011244974.1XP_011243276.1  

    See identical proteins and their annotated locations for XP_011243276.1

    UniProtKB/TrEMBL
    A0A087WPX0
    Conserved Domains (1) summary
    TIGR02168
    Location:4611250
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  10. XM_006518633.2XP_006518696.1  

    See identical proteins and their annotated locations for XP_006518696.1

    UniProtKB/TrEMBL
    A0A087WPX0
    Related
    ENSMUSP00000139952, OTTMUSP00000066043, ENSMUST00000190535, OTTMUST00000118306
    Conserved Domains (1) summary
    TIGR02168
    Location:4611250
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  11. XM_006518631.2XP_006518694.1  

    Conserved Domains (1) summary
    TIGR02168
    Location:4811271
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  12. XM_006518659.2XP_006518722.1  

    Conserved Domains (1) summary
    TIGR02168
    Location:4811243
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  13. XM_006518635.2XP_006518698.1  

    Conserved Domains (1) summary
    TIGR02168
    Location:4591248
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  14. XM_006518630.2XP_006518693.1  

    Conserved Domains (1) summary
    TIGR02168
    Location:4821272
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  15. XM_006518636.2XP_006518699.1  

    See identical proteins and their annotated locations for XP_006518699.1

    Conserved Domains (1) summary
    TIGR02168
    Location:4831245
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  16. XM_006518637.2XP_006518700.1  

    See identical proteins and their annotated locations for XP_006518700.1

    Conserved Domains (1) summary
    TIGR02168
    Location:4831245
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  17. XM_006518640.2XP_006518703.1  

    Conserved Domains (2) summary
    pfam03532
    Location:9891178
    OMS28_porin; OMS28 porin
    TIGR02168
    Location:4831245
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  18. XM_011244976.1XP_011243278.1  

    See identical proteins and their annotated locations for XP_011243278.1

    UniProtKB/TrEMBL
    A0A087WRS1
    Conserved Domains (1) summary
    COG1196
    Location:3331051
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  19. XM_006518642.2XP_006518705.1  

    See identical proteins and their annotated locations for XP_006518705.1

    UniProtKB/TrEMBL
    A0A087WRS1
    Related
    ENSMUSP00000140748, OTTMUSP00000066056, ENSMUST00000191446, OTTMUST00000118323
    Conserved Domains (1) summary
    COG1196
    Location:3331051
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  20. XM_006518643.2XP_006518706.1  

    UniProtKB/TrEMBL
    A0A087WQQ5
    Related
    ENSMUSP00000140301, OTTMUSP00000066042, ENSMUST00000190182, OTTMUST00000118305
    Conserved Domains (1) summary
    TIGR02168
    Location:4831244
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  21. XM_011244977.1XP_011243279.1  

    See identical proteins and their annotated locations for XP_011243279.1

    UniProtKB/TrEMBL
    A0A087WQ25
    Conserved Domains (1) summary
    TIGR02168
    Location:4831216
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  22. XM_011244975.1XP_011243277.1  

    See identical proteins and their annotated locations for XP_011243277.1

    UniProtKB/TrEMBL
    A0A087WP14
    Conserved Domains (1) summary
    TIGR02168
    Location:4611226
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  23. XM_006518639.2XP_006518702.1  

    See identical proteins and their annotated locations for XP_006518702.1

    UniProtKB/TrEMBL
    A0A087WP14
    Related
    ENSMUSP00000139585, OTTMUSP00000066045, ENSMUST00000191018, OTTMUST00000118308
    Conserved Domains (1) summary
    TIGR02168
    Location:4611226
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  24. XM_006518641.2XP_006518704.1  

    See identical proteins and their annotated locations for XP_006518704.1

    UniProtKB/TrEMBL
    A0A087WP85
    Conserved Domains (1) summary
    TIGR02168
    Location:4611221
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  25. XM_006518644.2XP_006518707.1  

    See identical proteins and their annotated locations for XP_006518707.1

    UniProtKB/TrEMBL
    A0A087WP85
    Related
    ENSMUSP00000139673, OTTMUSP00000066046, ENSMUST00000190999, OTTMUST00000118309
    Conserved Domains (1) summary
    TIGR02168
    Location:4611221
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  26. XM_006518653.2XP_006518716.1  

    UniProtKB/TrEMBL
    A0A087WS29
    Related
    ENSMUSP00000140873, OTTMUSP00000066044, ENSMUST00000186627, OTTMUST00000118307
    Conserved Domains (1) summary
    TIGR02168
    Location:4611170
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  27. XM_006518661.2XP_006518724.1  

    Conserved Domains (1) summary
    TIGR02168
    Location:4811214
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  28. XM_006518660.2XP_006518723.1  

    Conserved Domains (1) summary
    TIGR02168
    Location:4591220
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  29. XM_006518648.2XP_006518711.1  

    UniProtKB/TrEMBL
    A0A087WQI3
    Related
    ENSMUSP00000140206, OTTMUSP00000066051, ENSMUST00000187262, OTTMUST00000118318
    Conserved Domains (1) summary
    COG1196
    Location:3331051
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  30. XM_006518650.2XP_006518713.1  

    UniProtKB/TrEMBL
    A0A087WNW3
    Related
    ENSMUSP00000139521, OTTMUSP00000066057, ENSMUST00000186761, OTTMUST00000118324
    Conserved Domains (1) summary
    TIGR02168
    Location:4831216
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  31. XM_006518655.2XP_006518718.1  

    Conserved Domains (1) summary
    TIGR02168
    Location:4611193
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  32. XM_006518646.2XP_006518709.1  

    UniProtKB/TrEMBL
    A0A087WS23
    Related
    ENSMUSP00000140865, OTTMUSP00000066049, ENSMUST00000188553, OTTMUST00000118314
    Conserved Domains (2) summary
    pfam03532
    Location:9661155
    OMS28_porin; OMS28 porin
    TIGR02168
    Location:4611222
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  33. XM_006518647.2XP_006518710.1  

    See identical proteins and their annotated locations for XP_006518710.1

    UniProtKB/TrEMBL
    A0A087WPW5
    Conserved Domains (1) summary
    TIGR02168
    Location:4611198
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  34. XM_006518649.2XP_006518712.1  

    See identical proteins and their annotated locations for XP_006518712.1

    UniProtKB/TrEMBL
    A0A087WPW5
    Related
    ENSMUSP00000139946, OTTMUSP00000066054, ENSMUST00000191511, OTTMUST00000118321
    Conserved Domains (1) summary
    TIGR02168
    Location:4611198
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  35. XM_006518652.2XP_006518715.1  

    UniProtKB/TrEMBL
    A0A087WQG4
    Related
    ENSMUSP00000140186, OTTMUSP00000066048, ENSMUST00000185343, OTTMUST00000118312
    Conserved Domains (1) summary
    TIGR02168
    Location:4611198
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  36. XM_011244978.1XP_011243280.1  

    See identical proteins and their annotated locations for XP_011243280.1

    UniProtKB/TrEMBL
    A0A087WQD0
    Conserved Domains (1) summary
    TIGR02168
    Location:4611193
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  37. XM_006518651.2XP_006518714.1  

    See identical proteins and their annotated locations for XP_006518714.1

    UniProtKB/TrEMBL
    A0A087WQD0
    Related
    ENSMUSP00000140142, OTTMUSP00000066052, ENSMUST00000189533, OTTMUST00000118319
    Conserved Domains (1) summary
    TIGR02168
    Location:4611193
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  38. XM_006518654.2XP_006518717.1  

    UniProtKB/TrEMBL
    A0A087WS04
    Related
    ENSMUSP00000140845, OTTMUSP00000066047, ENSMUST00000188330, OTTMUST00000118311
    Conserved Domains (1) summary
    TIGR02168
    Location:4611193
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  39. XM_011244979.1XP_011243281.1  

    See identical proteins and their annotated locations for XP_011243281.1

    UniProtKB/TrEMBL
    A0A087WP48
    Conserved Domains (1) summary
    TIGR02168
    Location:4611170
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  40. XM_006518657.2XP_006518720.1  

    See identical proteins and their annotated locations for XP_006518720.1

    UniProtKB/TrEMBL
    A0A087WP48
    Related
    ENSMUSP00000140202, OTTMUSP00000066053, ENSMUST00000187039, OTTMUST00000118320
    Conserved Domains (1) summary
    TIGR02168
    Location:4611170
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  41. XM_006518656.2XP_006518719.1  

    See identical proteins and their annotated locations for XP_006518719.1

    UniProtKB/TrEMBL
    A0A087WP48
    Related
    ENSMUSP00000139625, OTTMUSP00000066050, ENSMUST00000185940, OTTMUST00000118316
    Conserved Domains (1) summary
    TIGR02168
    Location:4611170
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  42. XM_006518658.2XP_006518721.1  

    UniProtKB/TrEMBL
    A0A087WQF8
    Related
    ENSMUSP00000140178, OTTMUSP00000066055, ENSMUST00000189101, OTTMUST00000118322
    Conserved Domains (1) summary
    TIGR02168
    Location:4611170
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RNA

  1. XR_383141.2 RNA Sequence

  2. XR_874324.1 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000036.1 Alternate Mm_Celera

    Range
    43852604..43936861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)