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    pcaI 3-oxoadipate CoA-transferase subunit A [ Bordetella parapertussis 12822 ]

    Gene ID: 1667189, updated on 11-May-2013
    Gene symbol
    pcaI
    Gene description
    3-oxoadipate CoA-transferase subunit A
    Locus tag
    BPP2019
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bordetella parapertussis 12822 (strain: 12822)
    Lineage
    Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella
    Sequence :
    NC_002928.3 (2158743..2159459)

    NC_002928.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene thiolase Neighboring gene 3-oxoacyl-ACP reductase Neighboring gene acyl-CoA dehydrogenase Neighboring gene pseudo Neighboring gene 3-oxoadipate CoA-transferase subunit B Neighboring gene hypothetical protein Neighboring gene autotransporter

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Parkhill J, et al. Nat Genet, 2003 Sep. PMID 12910271.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction

    Miscellaneous features

    • Loc: 2158803-2159453 This hit extended beyond the end of the feature by 1 aa and was clipped.~HMMPfam hit to PF01144, Coenzyme A transferase, score 1.4e-88
    Names
    3-oxoadipate CoA-transferase subunit A
    NP_884277.1
    • ortholog of Bordetella pertussis (BX470248) BP1788

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002928.3

      Range
      2158743..2159459
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_884277.1 3-oxoadipate CoA-transferase subunit A [Bordetella parapertussis 12822]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q7W8W1
      Conserved Domains (1) summary
      TIGR02429
      Location:17 – 238
      Blast Score: 1015
      pcaI_scoA_fam; 3-oxoacid CoA-transferase, A subunit
    Nucleotide Protein
    Heading Accession and Version
    genomic BX640429.1 CAE37319.1
    genomic BX470249.1 CAE37319.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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