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Khsrp KH-type splicing regulatory protein [ Mus musculus (house mouse) ]

Gene ID: 16549, updated on 8-May-2016
Official Symbol
Khsrpprovided by MGI
Official Full Name
KH-type splicing regulatory proteinprovided by MGI
Primary source
MGI:MGI:1336214
See related
Ensembl:ENSMUSG00000007670
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fbp2; Ksrp; Fubp2; 6330409F21Rik
Orthologs
Location:
17 D; 17 29.63 cM
Exon count:
18
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 17 NC_000083.6 (57021049..57031507, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (57160472..57170930, complement)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene general transcription factor IIF, polypeptide 1 Neighboring gene adenylate kinase 5 pseudogene Neighboring gene solute carrier family 25, member 41 Neighboring gene solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 Neighboring gene crumbs family member 3

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA catabolic process IDA
Inferred from Direct Assay
more info
PubMed 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA transport IEA
Inferred from Electronic Annotation
more info
 
regulation of miRNA metabolic process IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
PubMed 
dendrite ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
far upstream element-binding protein 2
Names
FUSE-binding protein 2
KH type-splicing regulatory protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010613.3NP_034743.3  far upstream element-binding protein 2

    See identical proteins and their annotated locations for NP_034743.3

    Status: VALIDATED

    Source sequence(s)
    BB258658, BB645370, BC108414, CB247078
    Consensus CDS
    CCDS50157.1
    UniProtKB/Swiss-Prot
    Q3U0V1
    Related
    ENSMUSP00000007814, ENSMUST00000007814
    Conserved Domains (2) summary
    pfam09005
    Location:672690
    DUF1897; Domain of unknown function (DUF1897)
    cd00105
    Location:147209
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p3 C57BL/6J

    Range
    57021049..57031507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000039.1 Alternate Mm_Celera

    Range
    61368975..61379433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)