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Rps13 ribosomal protein S13 [ Rattus norvegicus (Norway rat) ]

Gene ID: 161477, updated on 8-May-2016
Official Symbol
Rps13provided by RGD
Official Full Name
ribosomal protein S13provided by RGD
Primary source
RGD:621027
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Summary
40S ribosomal subunit protein [RGD, Feb 2006]
Orthologs
Location:
1q34
Exon count:
6
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (185328902..185331332)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (192299622..192302052)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene CCA tRNA nucleotidyltransferase 1, mitochondrial-like Neighboring gene phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha Neighboring gene pleckstrin homology domain containing A7 Neighboring gene pleckstrin homology domain-containing family A member 6-like

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
5.8S rRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
mRNA binding ISO
Inferred from Sequence Orthology
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
small ribosomal subunit rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
negative regulation of RNA splicing ISO
Inferred from Sequence Orthology
more info
 
translation IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
focal adhesion ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
40S ribosomal protein S13
NP_569116.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_130432.2NP_569116.1  40S ribosomal protein S13

    See identical proteins and their annotated locations for NP_569116.1

    Status: VALIDATED

    Source sequence(s)
    AA686236, BC084724
    UniProtKB/Swiss-Prot
    P62278
    Conserved Domains (3) summary
    PTZ00072
    Location:4151
    PTZ00072; 40S ribosomal protein S13; Provisional
    pfam08069
    Location:160
    Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain
    cd00353
    Location:70145
    Ribosomal_S15p_S13e; Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    185328902..185331332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    168394210..168396640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)