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Icam5 intercellular adhesion molecule 5, telencephalin [ Mus musculus (house mouse) ]

Gene ID: 15898, updated on 30-May-2016
Official Symbol
Icam5provided by MGI
Official Full Name
intercellular adhesion molecule 5, telencephalinprovided by MGI
Primary source
MGI:MGI:109430
See related
Ensembl:ENSMUSG00000032174
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
TLN; CD50; Tlcn; Icam3; ICAM-3
Orthologs
Location:
9 A3; 9 7.7 cM
Exon count:
11
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 9 NC_000075.6 (21032038..21039036)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (20836482..20843480)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene intercellular adhesion molecule 1 Neighboring gene intercellular adhesion molecule 4, Landsteiner-Wiener blood group Neighboring gene microRNA 1900 Neighboring gene predicted gene, 26592 Neighboring gene zinc finger, GATA-like protein 1 Neighboring gene predicted gene, 38431 Neighboring gene ferredoxin 1-like

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC130520

Gene Ontology Provided by MGI

Function Evidence Code Pubs
integrin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
 
phagocytosis IDA
Inferred from Direct Assay
more info
PubMed 
single organismal cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
intercellular adhesion molecule 5
Names
ICAM-5
intercellular adhesion molecule 3
telencephalin

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008319.2NP_032345.2  intercellular adhesion molecule 5 precursor

    See identical proteins and their annotated locations for NP_032345.2

    Status: VALIDATED

    Source sequence(s)
    AC159314, AK135040, BB299138, BC113140, BY255874
    Consensus CDS
    CCDS22891.1
    UniProtKB/Swiss-Prot
    Q60625
    Related
    ENSMUSP00000019616, ENSMUST00000019616
    Conserved Domains (7) summary
    cd00096
    Location:764826
    Ig; Immunoglobulin domain
    cd05755
    Location:120219
    Ig2_ICAM-1_like; Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00409
    Location:416487
    IG; Immunoglobulin
    smart00410
    Location:756829
    IG_like; Immunoglobulin like
    pfam03921
    Location:32103
    ICAM_N; Intercellular adhesion molecule (ICAM), N-terminal domain
    pfam07679
    Location:572659
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:687742
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p3 C57BL/6J

    Range
    21032038..21039036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000031.1 Alternate Mm_Celera

    Range
    18300624..18307622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)