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Sdc2 syndecan 2 [ Mus musculus (house mouse) ]

Gene ID: 15529, updated on 28-May-2016
Official Symbol
Sdc2provided by MGI
Official Full Name
syndecan 2provided by MGI
Primary source
MGI:MGI:1349165
See related
Ensembl:ENSMUSG00000022261 Vega:OTTMUSG00000027993
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hspg1; Synd2; AA960457; syndecan-2; 4833414L08Rik
Orthologs
Location:
15 B3.1; 15 13.74 cM
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 15 NC_000081.6 (32920723..33034721)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (32850478..32964476)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41289 Neighboring gene predicted gene, 32618 Neighboring gene predicted gene, 32764 Neighboring gene carboxypeptidase Q Neighboring gene ribosomal protein L7-like 1 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
PDZ domain binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
cell migration IBA
Inferred from Biological aspect of Ancestor
more info
 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
regulation of dendrite morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cell surface IBA
Inferred from Biological aspect of Ancestor
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with synapse ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
syndecan-2
Names
HSPG
fibroglycan
heparan sulfate proteoglycan 1, cell surface-associated (fibroglycan)
heparan sulfate proteoglycan core protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008304.2NP_032330.1  syndecan-2 precursor

    See identical proteins and their annotated locations for NP_032330.1

    Status: PROVISIONAL

    Source sequence(s)
    AC129537, AC139845
    Consensus CDS
    CCDS27413.1
    UniProtKB/Swiss-Prot
    P43407
    Related
    ENSMUSP00000022871, OTTMUSP00000035199, ENSMUST00000022871, OTTMUST00000069337
    Conserved Domains (1) summary
    pfam01034
    Location:137200
    Syndecan; Syndecan domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p3 C57BL/6J

    Range
    32920723..33034721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000037.1 Alternate Mm_Celera

    Range
    33584115..33695490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)