Format

Send to:

Choose Destination

Hoxd4 homeobox D4 [ Mus musculus (house mouse) ]

Gene ID: 15436, updated on 8-May-2016
Official Symbol
Hoxd4provided by MGI
Official Full Name
homeobox D4provided by MGI
Primary source
MGI:MGI:96208
See related
Ensembl:ENSMUSG00000079277 Ensembl:ENSMUSG00000101174
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hox-4.2; Hox-5.1; 6030436D05Rik
Orthologs
Location:
2 44.13 cM; 2 D
Exon count:
6
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (74721978..74729160)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (74560035..74567217)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38462 Neighboring gene homeobox D8 Neighboring gene homeobox D3, opposite strand 1 Neighboring gene homeobox D3 Neighboring gene microRNA 10b Neighboring gene uncharacterized LOC102634401 Neighboring gene Hoxd antisense growth associated long non-coding RNA Neighboring gene homeobox D1

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
transcription factor activity, sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
anterior/posterior pattern specification IGI
Inferred from Genetic Interaction
more info
PubMed 
anterior/posterior pattern specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic skeletal system morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
embryonic skeletal system morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
stem cell differentiation IDA
Inferred from Direct Assay
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
homeobox protein Hox-D4
Names
homeo box D4
homeobox protein Hox-4.2
homeobox protein Hox-5.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010469.2NP_034599.2  homeobox protein Hox-D4

    See identical proteins and their annotated locations for NP_034599.2

    Status: VALIDATED

    Source sequence(s)
    AL928644
    Consensus CDS
    CCDS16145.1
    UniProtKB/Swiss-Prot
    P10628
    Related
    ENSMUSP00000047949, ENSMUST00000047904
    Conserved Domains (1) summary
    cd00086
    Location:153211
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

    Range
    74721978..74729160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000024.1 Alternate Mm_Celera

    Range
    76392107..76399289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)