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Hoxd1 homeobox D1 [ Mus musculus (house mouse) ]

Gene ID: 15429, updated on 28-May-2016
Official Symbol
Hoxd1provided by MGI
Official Full Name
homeobox D1provided by MGI
Primary source
MGI:MGI:96201
See related
Ensembl:ENSMUSG00000042448 Vega:OTTMUSG00000016601
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hox-4.9
Orthologs
Location:
2 C3; 2 44.13 cM
Exon count:
2
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (74762980..74765142)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (74601037..74603199)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene homeobox D3 Neighboring gene homeobox D4 Neighboring gene microRNA 10b Neighboring gene uncharacterized LOC102634401 Neighboring gene Hoxd antisense growth associated long non-coding RNA Neighboring gene metaxin 2 Neighboring gene ribosomal protein 10 pseudogene Neighboring gene ribosomal protein S8 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
embryonic skeletal system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
neuron differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
sensory perception of pain IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
homeobox protein Hox-D1
Names
homeo box D1
homeobox protein Hox-4.9

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010467.2NP_034597.2  homeobox protein Hox-D1

    See identical proteins and their annotated locations for NP_034597.2

    Status: VALIDATED

    Source sequence(s)
    AL928733, BC120537, BE956647
    Consensus CDS
    CCDS16147.1
    UniProtKB/Swiss-Prot
    Q01822
    Related
    ENSMUSP00000043078, OTTMUSP00000017905, ENSMUST00000047793, OTTMUST00000040130
    Conserved Domains (1) summary
    cd00086
    Location:233288
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

    Range
    74762980..74765142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000024.1 Alternate Mm_Celera

    Range
    76433115..76435276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)