Format

Send to:

Choose Destination

Hoxb5 homeobox B5 [ Mus musculus (house mouse) ]

Gene ID: 15413, updated on 8-May-2016
Official Symbol
Hoxb5provided by MGI
Official Full Name
homeobox B5provided by MGI
Primary source
MGI:MGI:96186
See related
Ensembl:ENSMUSG00000038700 Vega:OTTMUSG00000001987
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hox-2.1; AI385717
Orthologs
Location:
11 D; 11 59.82 cM
Exon count:
2
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 11 NC_000077.6 (96303512..96306121)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (96164826..96167435)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene homeobox B7 Neighboring gene homeobox B5 and homeobox B6, opposite strand Neighboring gene homeobox B6 Neighboring gene homeobox B3 Neighboring gene microRNA 10a Neighboring gene homeobox B4

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
anterior/posterior pattern specification IGI
Inferred from Genetic Interaction
more info
PubMed 
anterior/posterior pattern specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic skeletal system development IGI
Inferred from Genetic Interaction
more info
PubMed 
embryonic skeletal system morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
embryonic skeletal system morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
endothelial cell differentiation IDA
Inferred from Direct Assay
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of transcription from RNA polymerase II promoter IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
homeobox protein Hox-B5
Names
homeo box B5
homeobox protein H24.1
homeobox protein Hox-2.1
homeobox protein Mu-1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008268.2NP_032294.2  homeobox protein Hox-B5

    See identical proteins and their annotated locations for NP_032294.2

    Status: VALIDATED

    Source sequence(s)
    AK133512, AW490409, M26283
    Consensus CDS
    CCDS25296.1
    UniProtKB/Swiss-Prot
    P09079
    Related
    ENSMUSP00000035423, OTTMUSP00000001930, ENSMUST00000049272, OTTMUST00000003992
    Conserved Domains (1) summary
    cd00086
    Location:195253
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p3 C57BL/6J

    Range
    96303512..96306121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000033.1 Alternate Mm_Celera

    Range
    105954390..105956999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)