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Hoxa5 homeobox A5 [ Mus musculus (house mouse) ]

Gene ID: 15402, updated on 28-May-2016
Official Symbol
Hoxa5provided by MGI
Official Full Name
homeobox A5provided by MGI
Primary source
MGI:MGI:96177
See related
Ensembl:ENSMUSG00000038253 Vega:OTTMUSG00000018868
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hox-1.3
Orthologs
Location:
6 B3; 6 25.4 cM
Exon count:
2
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 6 NC_000072.6 (52201754..52204587, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (52151753..52154586, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene Hoxa cluster antisense RNA 2 Neighboring gene homeobox A3 Neighboring gene homeobox A4 Neighboring gene Hoxa cluster antisense RNA 3 Neighboring gene homeobox A6 Neighboring gene homeobox A7 Neighboring gene mistral long non-coding RNA

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA binding ISO
Inferred from Sequence Orthology
more info
 
RNA polymerase II core promoter proximal region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
transcription factor activity, sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
anterior/posterior pattern specification IGI
Inferred from Genetic Interaction
more info
PubMed 
anterior/posterior pattern specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
bronchiole development IMP
Inferred from Mutant Phenotype
more info
PubMed 
cartilage morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
cell-cell signaling involved in mammary gland development IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic skeletal system development IGI
Inferred from Genetic Interaction
more info
PubMed 
embryonic skeletal system morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
epithelial tube branching involved in lung morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
intestinal epithelial cell maturation IMP
Inferred from Mutant Phenotype
more info
PubMed 
lobar bronchus epithelium development IMP
Inferred from Mutant Phenotype
more info
PubMed 
lung alveolus development IMP
Inferred from Mutant Phenotype
more info
PubMed 
lung development IMP
Inferred from Mutant Phenotype
more info
PubMed 
lung goblet cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
lung-associated mesenchyme development IMP
Inferred from Mutant Phenotype
more info
PubMed 
mammary gland alveolus development IMP
Inferred from Mutant Phenotype
more info
PubMed 
mammary gland epithelial cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
mesenchymal-epithelial cell signaling IMP
Inferred from Mutant Phenotype
more info
PubMed 
morphogenesis of an epithelium IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
multicellular organism growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of angiogenesis ISO
Inferred from Sequence Orthology
more info
 
negative regulation of erythrocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
pattern specification process IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of myeloid cell differentiation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of receptor biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription from RNA polymerase II promoter IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
regulation of mammary gland epithelial cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
respiratory gaseous exchange IMP
Inferred from Mutant Phenotype
more info
PubMed 
respiratory system process IMP
Inferred from Mutant Phenotype
more info
PubMed 
skeletal system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
thyroid gland development IMP
Inferred from Mutant Phenotype
more info
PubMed 
trachea cartilage morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
trachea morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
homeobox protein Hox-A5
Names
homeo box A5
homeobox protein Hox-1.3
homeobox protein M2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010453.5NP_034583.1  homeobox protein Hox-A5

    See identical proteins and their annotated locations for NP_034583.1

    Status: PROVISIONAL

    Source sequence(s)
    AC015583
    Consensus CDS
    CCDS20143.1
    UniProtKB/Swiss-Prot
    P09021
    Related
    ENSMUSP00000039012, OTTMUSP00000020420, ENSMUST00000048794, OTTMUST00000045387
    Conserved Domains (1) summary
    cd00086
    Location:196254
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p3 C57BL/6J

    Range
    52201754..52204587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000028.1 Alternate Mm_Celera

    Range
    52723406..52726239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)