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CTNND1 catenin (cadherin-associated protein), delta 1 [ Homo sapiens (human) ]

Gene ID: 1500, updated on 13-Jul-2014
Official Symbol
CTNND1provided by HGNC
Official Full Name
catenin (cadherin-associated protein), delta 1provided by HGNC
Primary source
HGNC:2515
See related
Ensembl:ENSG00000198561; HPRD:03026; MIM:601045; Vega:OTTHUMG00000167272
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CAS; p120; CTNND; P120CAS; P120CTN; p120(CAS); p120(CTN)
Summary
This gene encodes a member of the Armadillo protein family, which function in adhesion between cells and signal transduction. Multiple translation initiation codons and alternative splicing result in many different isoforms being translated. Not all of the full-length natures of the described transcript variants have been determined. Read-through transcription also exists between this gene and the neighboring upstream thioredoxin-related transmembrane protein 2 (TMX2) gene. [provided by RefSeq, Dec 2010]
See CTNND1 in Epigenomics, MapViewer
Location:
11q11
Exon count :
21
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 11 NC_000011.10 (57761762..57819180)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (57520756..57586652)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene TMX2-CTNND1 readthrough (NMD candidate) Neighboring gene chromosome 11 open reading frame 31 Neighboring gene BTB (POZ) domain containing 18 Neighboring gene olfactory receptor, family 5, subfamily BA, member 1 pseudogene Neighboring gene olfactory receptor, family 5, subfamily AZ, member 1 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Readthrough TMX2-CTNND1

Readthrough gene: TMX2-CTNND1, Included gene: TMX2

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
cadherin binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 
protein kinase binding IEA
Inferred from Electronic Annotation
more info
 
protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 
receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
adherens junction organization TAS
Traceable Author Statement
more info
 
brain development IEA
Inferred from Electronic Annotation
more info
 
cell adhesion NAS
Non-traceable Author Statement
more info
PubMed 
cell junction assembly TAS
Traceable Author Statement
more info
 
cell-cell junction organization TAS
Traceable Author Statement
more info
 
epithelial cell differentiation involved in salivary gland development IEA
Inferred from Electronic Annotation
more info
 
keratinocyte differentiation IEA
Inferred from Electronic Annotation
more info
 
morphogenesis of a polarized epithelium IEA
Inferred from Electronic Annotation
more info
 
negative regulation of canonical Wnt signaling pathway IMP
Inferred from Mutant Phenotype
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
salivary gland morphogenesis IEA
Inferred from Electronic Annotation
more info
 
single organismal cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell-cell junction IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytosol IMP
Inferred from Mutant Phenotype
more info
 
dendritic spine IEA
Inferred from Electronic Annotation
more info
 
extracellular vesicular exosome IDA
Inferred from Direct Assay
more info
PubMed 
growth cone IEA
Inferred from Electronic Annotation
more info
 
lamellipodium IEA
Inferred from Electronic Annotation
more info
 
midbody IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
 
plasma membrane IMP
Inferred from Mutant Phenotype
more info
 
plasma membrane TAS
Traceable Author Statement
more info
 
synapse IEA
Inferred from Electronic Annotation
more info
 
zonula adherens IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
catenin delta-1
Names
catenin delta-1
p120 catenin
cadherin-associated Src substrate

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029078.1 

    Range
    5001..62419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001085458.1NP_001078927.1  catenin delta-1 isoform 1ABC

    See proteins identical to NP_001078927.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) is the longest variant and it encodes the longest protein (isoform 1ABC). This variant has also been called hp120ctn-1ABC.
    Source sequence(s)
    AF062341, AI088791, BC075795, BP217375, CN431494, DB090596
    Consensus CDS
    CCDS44604.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000382004, OTTHUMP00000235577, ENST00000399050, OTTHUMT00000393944
    Conserved Domains (1) summary
    cd00020
    Location:363481
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  2. NM_001085459.1NP_001078928.1  catenin delta-1 isoform 1AB

    See proteins identical to NP_001078928.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame segment in the coding region, compared to variant 1. The resulting protein (isoform 1AB) is shorter than isoform 1ABC. This variant is also called hp120ctn-1AB.
    Source sequence(s)
    AF062328, AI088791, BC075795, BP217375, CN431494, DB090596
    Consensus CDS
    CCDS44605.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000354823, OTTHUMP00000235579, ENST00000361332, OTTHUMT00000393946
    Conserved Domains (1) summary
    cd00020
    Location:363481
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  3. NM_001085460.1NP_001078929.1  catenin delta-1 isoform 1A

    See proteins identical to NP_001078929.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) uses a different splice site in the 5' UTR and lacks two alternate in-frame segments in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-1A with variants 5 and 6. Variants 4, 5, and 6 encode the same protein (isoform 1A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AF062324, AI088791, AL698868, BC075795, BP217375, CN431494
    Consensus CDS
    CCDS44606.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000351527, OTTHUMP00000235582, ENST00000358694, OTTHUMT00000393949
    Conserved Domains (1) summary
    cd00020
    Location:363481
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  4. NM_001085461.1NP_001078930.1  catenin delta-1 isoform 1A

    See proteins identical to NP_001078930.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) lacks two alternate in-frame segments in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-1A with variants 4 and 6. Variants 4, 5, and 6 encode the same protein (isoform 1A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AF062339, AI088791, BC075795, BP217375, CN431494, DB090596
    Consensus CDS
    CCDS44606.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000354907, ENST00000361796
    Conserved Domains (1) summary
    cd00020
    Location:363481
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  5. NM_001085462.1NP_001078931.1  catenin delta-1 isoform 1A

    See proteins identical to NP_001078931.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) uses a different splice site in the 5' UTR, lacks an alternate segment in the 5' UTR, and lacks two alternate in-frame segments in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-1A with variants 4 and 5. Variants 4, 5, and 6 encode the same protein (isoform 1A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AF062343, AI088791, BC075795, BP217375, CN431494
    Consensus CDS
    CCDS44606.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000413586, OTTHUMP00000235588, ENST00000428599, OTTHUMT00000393955
    Conserved Domains (1) summary
    cd00020
    Location:363481
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  6. NM_001085463.1NP_001078932.1  catenin delta-1 isoform 3ABC

    See proteins identical to NP_001078932.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7) has multiple differences and uses a downstream start codon, compared to variant 1. The resulting protein (isoform 3ABC) has a shorter N-terminus, compared to isoform 1ABC. This variant is also called hp120ctn-3ABC.
    Source sequence(s)
    AF062323, AI088791, BC075795, BP217375, CN431494
    Consensus CDS
    CCDS44608.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000403518, OTTHUMP00000235650, ENST00000415361, OTTHUMT00000394040
    Conserved Domains (1) summary
    cd00020
    Location:262380
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  7. NM_001085464.1NP_001078933.1  catenin delta-1 isoform 3AB

    See proteins identical to NP_001078933.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8) has multiple differences and uses a downstream start codon, compared to variant 1. The resulting protein (isoform 3AB) has a shorter N-terminus, compared to isoform 1ABC. This variant is also called hp120ctn-3AB.
    Source sequence(s)
    AF062338, AI088791, BC075795, BP217375, CN431494
    Consensus CDS
    CCDS53633.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000437327, OTTHUMP00000235649, ENST00000530094, OTTHUMT00000394039
    Conserved Domains (1) summary
    cd00020
    Location:262380
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  8. NM_001085465.1NP_001078934.1  catenin delta-1 isoform 3B

    See proteins identical to NP_001078934.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9) has multiple differences and uses a downstream start codon, compared to variant 1. The resulting protein (isoform 3B) is shorter when it is compared to isoform 1ABC. This variant is also called hp120ctn-3B.
    Source sequence(s)
    AF062332, AI088791, BC075795, BP217375, CN431494
    Consensus CDS
    CCDS53634.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000434949, OTTHUMP00000235583, ENST00000532787, OTTHUMT00000393950
    Conserved Domains (1) summary
    cd00020
    Location:262380
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  9. NM_001085466.1NP_001078935.1  catenin delta-1 isoform 3AC

    See proteins identical to NP_001078935.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (10) has multiple differences, compared to variant 1. The resulting protein (isoform 3AC) is shorter than isoform 1ABC. This variant is also called hp120ctn-3AC.
    Source sequence(s)
    AF062337, AI088791, BC075795, BP217375, CN431494
    Consensus CDS
    CCDS53632.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000435266, OTTHUMP00000235590, ENST00000528232, OTTHUMT00000393957
    Conserved Domains (1) summary
    cd00020
    Location:262380
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  10. NM_001085467.1NP_001078936.1  catenin delta-1 isoform 3A

    See proteins identical to NP_001078936.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (11) lacks multiple alternate segments in the 5' UTR and in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-3A with variants 12 and 13. Variants 11, 12, and 13 encode the same protein (isoform 3A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AF062334, AI088791, BC075795, BP217375, CN431494, DB090596
    Consensus CDS
    CCDS44609.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000409930, OTTHUMP00000235576, ENST00000426142, OTTHUMT00000393943
    Conserved Domains (1) summary
    cd00020
    Location:262380
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  11. NM_001085468.1NP_001078937.1  catenin delta-1 isoform 3A

    See proteins identical to NP_001078937.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (12) lacks multiple alternate segments in the 5' UTR and in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-3A with variants 11 and 13. Variants 11, 12, and 13 encode the same protein (isoform 3A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AF062335, AI088791, BC075795, BP217375, CN431494
    Consensus CDS
    CCDS44609.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000437156, OTTHUMP00000235581, ENST00000529986, OTTHUMT00000393948
    Conserved Domains (1) summary
    cd00020
    Location:262380
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  12. NM_001085469.1NP_001078938.1  catenin delta-1 isoform 3A

    See proteins identical to NP_001078938.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (13) lacks multiple alternate segments in the 5' UTR and in the coding region, compared to variant 1. This variant shares the alternate name of hp120ctn-3A with variants 11 and 12. Variants 11, 12, and 13 encode the same protein (isoform 3A), which is shorter than isoform 1ABC.
    Source sequence(s)
    AF062336, AI088791, BC075795, BP217375, CN431494
    Consensus CDS
    CCDS44609.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000434017, OTTHUMP00000235651, ENST00000532245, OTTHUMT00000394041
    Conserved Domains (1) summary
    cd00020
    Location:262380
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  13. NM_001206883.1NP_001193812.1  catenin delta-1 isoform 2ABC

    See proteins identical to NP_001193812.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (14) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2ABC) has a shorter N-terminus than isoform 1ABC.
    Source sequence(s)
    AF062319, AI079200, AP001931, BP217375
    Consensus CDS
    CCDS55763.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000433276, OTTHUMP00000235595, ENST00000532844, OTTHUMT00000393962
    Conserved Domains (1) summary
    cd00020
    Location:309427
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  14. NM_001206884.1NP_001193813.1  catenin delta-1 isoform 2AC

    See proteins identical to NP_001193813.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (15) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2AC) is shorter than isoform 1ABC.
    Source sequence(s)
    AF062320, AI079200, AP001931, BP217375
    Consensus CDS
    CCDS55764.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000436744, OTTHUMP00000235587, ENST00000530748, OTTHUMT00000393954
    Conserved Domains (1) summary
    cd00020
    Location:309427
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  15. NM_001206885.1NP_001193814.1  catenin delta-1 isoform 1AC

    See proteins identical to NP_001193814.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (16) lacks an in-frame exon in the 3_ coding region, compared to variant 1. This results in a shorter protein (isoform 1AC), compared to isoform 1ABC).
    Source sequence(s)
    AF062321, AI079200, AP001931, BP217375
    UniProtKB/Swiss-Prot
    O60716
    Conserved Domains (1) summary
    cd00020
    Location:363481
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  16. NM_001206886.1NP_001193815.1  catenin delta-1 isoform 2AB

    See proteins identical to NP_001193815.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (17) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2AB) is shorter than isoform 1ABC.
    Source sequence(s)
    AF062322, AI079200, AP001931, BP217375
    Consensus CDS
    CCDS55765.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000433334, OTTHUMP00000235648, ENST00000526357, OTTHUMT00000394038
    Conserved Domains (1) summary
    cd00020
    Location:309427
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  17. NM_001206887.1NP_001193816.1  catenin delta-1 isoform 2B

    See proteins identical to NP_001193816.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (18) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2B) is shorter than isoform 1ABC.
    Source sequence(s)
    AF062325, AI079200, AP001931, BP217375
    Consensus CDS
    CCDS55767.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000435494, OTTHUMP00000235593, ENST00000529873, OTTHUMT00000393960
    Conserved Domains (1) summary
    cd00020
    Location:309427
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  18. NM_001206888.1NP_001193817.1  catenin delta-1 isoform 2A

    See proteins identical to NP_001193817.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (19) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2A) is shorter than isoform 1ABC.
    Source sequence(s)
    AF062327, AI079200, AP001931, BP217375
    Consensus CDS
    CCDS55766.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000432243, OTTHUMP00000235586, ENST00000528621, OTTHUMT00000393953
    Conserved Domains (1) summary
    cd00020
    Location:309427
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  19. NM_001206889.1NP_001193818.1  catenin delta-1 isoform 2A

    See proteins identical to NP_001193818.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (20) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2A) is shorter than isoform 1ABC.
    Source sequence(s)
    AF062329, AI079200, AP001931, BP217375
    Consensus CDS
    CCDS55766.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000435379, OTTHUMP00000235585, ENST00000532649, OTTHUMT00000393952
    Conserved Domains (1) summary
    cd00020
    Location:309427
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  20. NM_001206890.1NP_001193819.1  catenin delta-1 isoform 3A

    See proteins identical to NP_001193819.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (21) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (3A) is shorter than isoform 1ABC.
    Source sequence(s)
    AF062330, AI079200, AP001931, BP217375
    Consensus CDS
    CCDS44609.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000432075, OTTHUMP00000235580, ENST00000532463, OTTHUMT00000393947
    Conserved Domains (1) summary
    cd00020
    Location:262380
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  21. NM_001206891.1NP_001193820.1  catenin delta-1 isoform 2A

    See proteins identical to NP_001193820.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (22) differs in the 5' UTR and and has multiple coding region differences, compared to variant 1. The encoded isoform (2A) is shorter than isoform 1ABC.
    Source sequence(s)
    AF062331, AI079200, AP001931, BP217375
    Consensus CDS
    CCDS55766.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000436323, OTTHUMP00000235574, ENST00000529526, OTTHUMT00000393941
    Conserved Domains (1) summary
    cd00020
    Location:309427
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  22. NM_001331.2NP_001322.1  catenin delta-1 isoform 1B

    See proteins identical to NP_001322.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks two alternate in-frame segments in the coding region, compared to variant 1. The encoded protein (isoform 1B) is shorter than isoform 1ABC. Another name for this variant is hp120ctn-1B.
    Source sequence(s)
    AF062317, AI088791, BC075795, BP217375, CN431494, DB090596
    Consensus CDS
    CCDS44607.1
    UniProtKB/Swiss-Prot
    O60716
    Related
    ENSP00000354785, OTTHUMP00000235578, ENST00000361391, OTTHUMT00000393945
    Conserved Domains (1) summary
    cd00020
    Location:363481
    Blast Score: 257
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000011.10 

    Range
    57761762..57819180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HuRef

Genomic

  1. AC_000143.1 

    Range
    53877613..53935179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018922.2 

    Range
    57396253..57453671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

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