Format

Send to:

Choose Destination

ODF4 outer dense fiber of sperm tails 4 [ Homo sapiens (human) ]

Gene ID: 146852, updated on 8-May-2016
Official Symbol
ODF4provided by HGNC
Official Full Name
outer dense fiber of sperm tails 4provided by HGNC
Primary source
HGNC:HGNC:19056
See related
Ensembl:ENSG00000184650 HPRD:17658; MIM:610097; Vega:OTTHUMG00000108190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT134; CT136; OPPO1
Summary
This gene encodes a protein that is localized in the outer dense fibers of the tails of mature sperm. This protein is thought to have some important role in the sperm tail. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016]
Orthologs
Location:
17p13.1
Exon count:
5
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 17 NC_000017.11 (8339837..8346048)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (8243158..8249364)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376800 Neighboring gene Rho guanine nucleotide exchange factor 15 Neighboring gene uncharacterized LOC100128288 Neighboring gene uncharacterized LOC105371523 Neighboring gene KRAB-A domain containing 2

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC138215, MGC138219

Gene Ontology Provided by GOA

Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
outer dense fiber IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
outer dense fiber protein 4
Names
cancer/testis antigen 134
cancer/testis antigen 136
hOPPO1
outer dense fiber 4
outer dense fiber of sperm tails protein 4
testis-specific protein oppo 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001319953.1NP_001306882.1  outer dense fiber protein 4 isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
    Source sequence(s)
    AC135178
    UniProtKB/TrEMBL
    C3TX97
  2. NM_153007.4NP_694552.2  outer dense fiber protein 4 isoform 1

    See identical proteins and their annotated locations for NP_694552.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AB081120, AC135178
    Consensus CDS
    CCDS11140.1
    UniProtKB/Swiss-Prot
    Q2M2E3
    Related
    ENSP00000331086, OTTHUMP00000135332, ENST00000328248, OTTHUMT00000226996

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p2 Primary Assembly

    Range
    8339837..8346048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005256476.2XP_005256533.1  

    See identical proteins and their annotated locations for XP_005256533.1

  2. XM_005256478.2XP_005256535.1  

    Related
    ENSP00000461942, OTTHUMP00000259604, ENST00000584943, OTTHUMT00000442316
  3. XM_011523688.1XP_011521990.1  

    See identical proteins and their annotated locations for XP_011521990.1

Alternate CHM1_1.1

Genomic

  1. NC_018928.2 Alternate CHM1_1.1

    Range
    8252087..8258262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)