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Gjb6 gap junction protein, beta 6 [ Mus musculus (house mouse) ]

Gene ID: 14623, updated on 28-May-2016
Official Symbol
Gjb6provided by MGI
Official Full Name
gap junction protein, beta 6provided by MGI
Primary source
MGI:MGI:107588
See related
Ensembl:ENSMUSG00000040055 Vega:OTTMUSG00000034673
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cx30; AA958971; D14Bwg0506e
Orthologs
Location:
14 C3; 14 30.1 cM
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 14 NC_000080.6 (57123301..57133611, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (57742140..57752414, complement)

Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene gap junction protein, beta 2 Neighboring gene predicted gene, 32912 Neighboring gene predicted gene 4491 Neighboring gene predicted gene, 41160 Neighboring gene 40S ribosomal protein S17 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell communication IEA
Inferred from Electronic Annotation
more info
 
ear morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of cell proliferation ISO
Inferred from Sequence Orthology
more info
 
sensory perception of sound IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
apical plasma membrane ISO
Inferred from Sequence Orthology
more info
 
cell junction ISO
Inferred from Sequence Orthology
more info
 
connexon complex IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
gap junction IDA
Inferred from Direct Assay
more info
PubMed 
gap junction ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
gap junction beta-6 protein
Names
connexin-30
gap junction membrane channel protein beta 6

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001010937.2NP_001010937.1  gap junction beta-6 protein

    See identical proteins and their annotated locations for NP_001010937.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the shorter transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK141610, CD775199
    Consensus CDS
    CCDS27154.1
    UniProtKB/Swiss-Prot
    P70689
    UniProtKB/TrEMBL
    Q3URC5
    Related
    ENSMUSP00000035630, OTTMUSP00000047949, ENSMUST00000039380, OTTMUST00000088018
    Conserved Domains (2) summary
    pfam00029
    Location:2108
    Connexin; Connexin
    pfam10582
    Location:146213
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
  2. NM_001271663.1NP_001258592.1  gap junction beta-6 protein

    See identical proteins and their annotated locations for NP_001258592.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in the 5' UTR compared to variant 2. Both variants 2 and 3 encode the same protein.
    Source sequence(s)
    AC119952
    Consensus CDS
    CCDS27154.1
    UniProtKB/Swiss-Prot
    P70689
    UniProtKB/TrEMBL
    Q3URC5
    Conserved Domains (2) summary
    pfam00029
    Location:2108
    Connexin; Connexin
    pfam10582
    Location:146213
    Connexin_CCC; Gap junction channel protein cysteine-rich domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000080.6 Reference GRCm38.p3 C57BL/6J

    Range
    57123301..57133611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006518561.2XP_006518624.1  

    See identical proteins and their annotated locations for XP_006518624.1

    UniProtKB/Swiss-Prot
    P70689
    UniProtKB/TrEMBL
    Q3URC5
    Conserved Domains (2) summary
    pfam00029
    Location:2108
    Connexin; Connexin
    pfam10582
    Location:146213
    Connexin_CCC; Gap junction channel protein cysteine-rich domain
  2. XM_006518560.2XP_006518623.1  

    See identical proteins and their annotated locations for XP_006518623.1

    UniProtKB/Swiss-Prot
    P70689
    UniProtKB/TrEMBL
    Q3URC5
    Conserved Domains (2) summary
    pfam00029
    Location:2108
    Connexin; Connexin
    pfam10582
    Location:146213
    Connexin_CCC; Gap junction channel protein cysteine-rich domain

Alternate Mm_Celera

Genomic

  1. AC_000036.1 Alternate Mm_Celera

    Range
    54913861..54924166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_008128.3: Suppressed sequence

    Description
    NM_008128.3: This RefSeq was permanently suppressed because it contains intronic sequence.