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    B3GALTL beta 1,3-galactosyltransferase-like [ Homo sapiens ]

    Gene ID: 145173, updated on 11-May-2012

    Summary

    Official Symbol
    B3GALTLprovided by HGNC
    Official Full Name
    beta 1,3-galactosyltransferase-likeprovided by HGNC
    Primary source
    HGNC:20207
    Locus tag
    RP11-367C11.1
    See related
    Ensembl:ENSG00000187676; HPRD:12513; MIM:610308; Vega:OTTHUMG00000016688
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    B3GTL; Gal-T; B3GLCT; B3Glc-T; beta3Glc-T
    Summary
    The protein encoded by this gene is a beta-1,3-glucosyltransferase that transfers glucose to O-linked fucosylglycans on thrombospondin type-1 repeats (TSRs) of several proteins. The encoded protein is a type II membrane protein. Defects in this gene are a cause of Peters-plus syndrome (PPS).[provided by RefSeq, Mar 2009]

    Genomic context

    Location :
    13q12.3
    Sequence :
    Chromosome: 13; NC_000013.10 (31774112..31906413)
    See B3GALTL in Epigenomics, MapViewer

    Chromosome 13 - NC_000013.10Genomic Context describing neighboring genes Neighboring gene testis expressed 26 Neighboring gene heat shock 105kDa/110kDa protein 1 Neighboring gene relaxin/insulin-like family peptide receptor 2 Neighboring gene eukaryotic translation elongation factor 1 delta pseudogene 3

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Peters-plus syndrome

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Peters plus syndrome is characterized by anterior chamber eye anomalies, disproportionate short stature, variable developmental delay/intellectual disability, characteristic facial features, and cleft lip/palate. The most common anterior chamber defect is Peters' anomaly, consisting of a central corneal opacification, thinning of the posterior cornea, and iridocorneal adhesions, and ranging from mild to severe. Cataracts and glaucoma are common. Growth deficiency with rhizomelic limb shortening is invariably present. Developmental delay is observed in about 80% of children; although some adults have normal cognitive function, intellectual disability can range from mild to severe. Cleft lip is present in 45% and cleft palate in 33%.
    Diagnosis Testing
    Diagnosis is based on clinical findings and molecular genetic testing of B3GALTL, the only gene in which mutations are known to cause Peters plus syndrome. Most affected individuals tested to date are homozygous for a hot spot splice mutation in intron 8 (c.660+1G>A).
    Genetic Counseling
    Peters plus syndrome is inherited in an autosomal recessive manner. The parents of an affected child are obligate heterozygotes and thus carry one mutant allele. Heterozygotes (carriers) are asymptomatic. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. There is an increased chance for miscarriages and second- and third-trimester fetal loss of homozygously affected fetuses. Carrier testing for at-risk family members and prenatal diagnosis for pregnancies at increased risk are possible if the disease-causing mutations in the family are known.
    References

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    • Other types of O-glycan biosynthesis, organism-specific biosystem (from KEGG)
      Other types of O-glycan biosynthesis, organism-specific biosystemO-mannosyl glycans are a type of O-glycans that are found both in eukaryotes and prokaryotes. Biosynthesis of O-mannosyl glycans is initiated by the transfer of mannose from Man-P-Dol to serine or th...
    • Other types of O-glycan biosynthesis, conserved biosystem (from KEGG)
      Other types of O-glycan biosynthesis, conserved biosystemO-mannosyl glycans are a type of O-glycans that are found both in eukaryotes and prokaryotes. Biosynthesis of O-mannosyl glycans is initiated by the transfer of mannose from Man-P-Dol to serine or th...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    transferase activity, transferring glycosyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    fucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    beta-1,3-glucosyltransferase
    Names
    beta-1,3-glucosyltransferase
    beta 3-glycosyltransferase-like
    beta-3-glycosyltransferase-like
    UDP-GAL:beta-GlcNAc beta-1,3-galactosyltransferase-like

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011732.1 RefSeqGene

      Range
      5001..137302
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_194318.3NP_919299.3  beta-1,3-glucosyltransferase precursor

      Status: REVIEWED

      Source sequence(s)
      AA769548, AB101481, AV728071, AY190526, DA290408, DN999521
      Consensus CDS
      CCDS9341.1
      UniProtKB/Swiss-Prot
      Q6Y288
      Related
      ENSP00000343002, OTTHUMP00000018218, ENST00000343307, OTTHUMT00000044396
      Conserved Domains (1) summary
      cl09537
      Location:264467
      Blast Score: 585
      Galactosyl_T; Galactosyltransferase

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000013.10 Reference GRCh37.p5 Primary Assembly

      Range
      31774112..31906413
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000145.1 Alternate HuRef

      Range
      12600539..12717555
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AL137142.20 CAI12432.2
    genomic AL138965.10 CAH73049.2
    genomic CH471075.1 EAX08483.1
    mRNA AA769548.1 None
    mRNA AB101481.1 BAD13528.1
    mRNA AK094979.1 None
    mRNA AK291273.1 BAF83962.1
    mRNA AV728071.1 None
    mRNA AY190526.1 AAO37647.1
    mRNA BC031597.1 None
    mRNA BC032021.1 None
    mRNA BC047395.1 None
    mRNA BC068595.1 AAH68595.1
    mRNA BX647932.1 None
    mRNA DA290408.1 None
    mRNA DN999521.1 None
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Y288.2 GenPept UniProtKB/Swiss-Prot:Q6Y288

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