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ypfN PF13980 family protein YpfN [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 1450286, updated on 4-Apr-2024

Summary

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Gene symbol
ypfN
Gene description
PF13980 family protein YpfN
Primary source
ASAP:ABE-0285068
Locus tag
b4547
See related
ECOCYC:G0-10463
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2468
Summary
There are YpfN homologs in Salmonella, Yersinia and other bacteria. [More information is available at EcoGene: EG14399].
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Genomic context

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Sequence:
NC_000913.3 (2592762..2592962)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative reductase YffB Neighboring gene succinyl-diaminopimelate desuccinylase Neighboring gene esterase YpfH Neighboring gene tRNA(Met) cytidine acetyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of novel small RNAs using comparative genomics and microarrays. Wassarman KM, et al. Genes Dev, 2001 Jul 1. PMID 11445539, Free PMC Article
  2. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
PF13980 family protein YpfN

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2592762..2592962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_588465.1 PF13980 family protein YpfN [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for YP_588465.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7GYW0
    Conserved Domains (1) summary
    PRK13664
    Location:1 → 62
    PRK13664; hypothetical protein; Provisional
Nucleotide Protein
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