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dpsA DNA starvation/stationary phase protection protein DpsA [ Halobacterium salinarum NRC-1 ]

Gene ID: 1448825, updated on 31-Mar-2024

Summary

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Gene symbol
dpsA
Gene description
DNA starvation/stationary phase protection protein DpsA
Locus tag
VNG_RS09555
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG2443G; VNG_2443G
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Genomic context

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Sequence:
NC_002607.1 (1833843..1834391, complement)

NC_002607.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent DNA helicase Neighboring gene hypothetical protein Neighboring gene metallophosphoesterase Neighboring gene helix-turn-helix domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002607.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression and regulation pattern of ferritin-like DpsA in the archaeon Halobacterium salinarum. Reindel S, et al. Biometals, 2006 Feb. PMID 16502328
  2. Expression and regulation pattern of ferritin-like DpsA in the archaeon Halobacterium Salinarum. Reindel S, et al. Biometals, 2005 Aug. PMID 16158231
  3. Iron-oxo clusters biomineralizing on protein surfaces: structural analysis of Halobacterium salinarum DpsA in its low- and high-iron states. Zeth K, et al. Proc Natl Acad Sci U S A, 2004 Sep 21. PMID 15365182, Free PMC Article
  4. The DpsA-homologue of the archaeon Halobacterium salinarum is a ferritin. Reindel S, et al. Biochim Biophys Acta, 2002 Jul 29. PMID 12147354
  5. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. DpsA shows increasing expression of dpsA mRNA in iron rich media and under conditions of oxidative stress (H2O2), whereas under iron deficient conditions mRNA-levels decrease.
    Title: Expression and regulation pattern of ferritin-like DpsA in the archaeon Halobacterium salinarum.
  2. DpsA is a ferritin-like protein
    Title: Expression and regulation pattern of ferritin-like DpsA in the archaeon Halobacterium Salinarum.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
DNA starvation/stationary phase protection protein DpsA
WP_010903826.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002607.1 Reference assembly

    Range
    1833843..1834391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010903826.1 MULTISPECIES: DNA starvation/stationary phase protection protein DpsA [Halobacterium]

    See identical proteins and their annotated locations for WP_010903826.1

    UniProtKB/Swiss-Prot
    Q9HMP7
    UniProtKB/TrEMBL
    A0A4D6GU48, A0A510N981, A0A841HBK9, A0A895A2G4, A0A895AI20, B0R7W1
    Conserved Domains (1) summary
    COG0783
    Location:22 → 171
    Dps; DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism, Defense mechanisms]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9HMP7.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases