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VNG_RS12220 ISNCY-like element ISH7A family transposase [ Halobacterium salinarum NRC-1 ]

Gene ID: 1446807, updated on 31-Mar-2024

Summary

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Gene symbol
VNG_RS12220
Gene description
ISNCY-like element ISH7A family transposase
Locus tag
VNG_RS12220
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG7005
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Genomic context

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Location:
plasmid: pNRC100
Sequence:
NC_001869.1 (1905..3719, complement)

NC_001869.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene DUF6516 family protein Neighboring gene ISNCY family transposase ISH7A Neighboring gene helix-turn-helix transcriptional regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001869.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article
  2. Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Pfeiffer F, et al. Genomics, 2008 Apr. PMID 18313895
  3. Exploring bacterial insertion sequences with ISfinder: objectives, uses, and future developments. Siguier P, et al. Methods Mol Biol, 2012. PMID 22367867

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ISNCY-like element ISH7A family transposase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001869.1 Reference assembly

    Range
    1905..3719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010890539.1 MULTISPECIES: ISNCY-like element ISH7A family transposase [Halobacteriales]

    See identical proteins and their annotated locations for WP_010890539.1

    UniProtKB/TrEMBL
    B0R8J4, O51959
    Conserved Domains (1) summary
    COG3385
    Location:193 → 604
    InsG; IS4 transposase [Mobilome: prophages, transposons]
Nucleotide Protein
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Gene LinkOut

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