Format

Send to:

Choose Destination

Gata5 GATA binding protein 5 [ Mus musculus (house mouse) ]

Gene ID: 14464, updated on 28-May-2016
Official Symbol
Gata5provided by MGI
Official Full Name
GATA binding protein 5provided by MGI
Primary source
MGI:MGI:109497
See related
Ensembl:ENSMUSG00000015627 Vega:OTTMUSG00000016299
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
Location:
2 H4; 2 102.85 cM
Exon count:
7
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (180325088..180335512, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (180059793..180069384, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene RBBP8 N-terminal like Neighboring gene predicted gene, 29943 Neighboring gene GATA binding protein 5, opposite strand Neighboring gene predicted gene, 29995 Neighboring gene RIKEN cDNA B230312C02 gene Neighboring gene Mir1a-1 and Mir133a-2 host gene

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
RNA polymerase II transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enhancer sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IDA
Inferred from Direct Assay
more info
PubMed 
transcription factor activity, sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
transcription regulatory region DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
transcription regulatory region DNA binding ISO
Inferred from Sequence Orthology
more info
PubMed 
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding IBA
Inferred from Biological aspect of Ancestor
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
anatomical structure formation involved in morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
cell development IBA
Inferred from Biological aspect of Ancestor
more info
 
cell fate commitment IBA
Inferred from Biological aspect of Ancestor
more info
 
cellular response to BMP stimulus IDA
Inferred from Direct Assay
more info
PubMed 
digestive tract development IBA
Inferred from Biological aspect of Ancestor
more info
 
heart development IBA
Inferred from Biological aspect of Ancestor
more info
 
intestinal epithelial cell differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
organ morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
tissue development IBA
Inferred from Biological aspect of Ancestor
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
PubMed 
transcription factor complex IBA
Inferred from Biological aspect of Ancestor
more info
 
Preferred Names
transcription factor GATA-5
Names
GATA-binding factor 5
GATA-binding protein 5
Transcription factor GATA-5 (GATA binding factor-5)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008093.2NP_032119.2  transcription factor GATA-5

    See identical proteins and their annotated locations for NP_032119.2

    Status: VALIDATED

    Source sequence(s)
    AK142213, AL663027
    Consensus CDS
    CCDS17175.1
    UniProtKB/Swiss-Prot
    P97489
    Related
    ENSMUSP00000015771, OTTMUSP00000017494, ENSMUST00000015771, OTTMUST00000039168
    Conserved Domains (3) summary
    smart00401
    Location:245294
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:250300
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:1181
    GATA-N; GATA-type transcription activator, N-terminal

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

    Range
    180325088..180335512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500554.2XP_006500617.1  

    See identical proteins and their annotated locations for XP_006500617.1

    UniProtKB/Swiss-Prot
    P97489
    Conserved Domains (3) summary
    smart00401
    Location:245294
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:250300
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:1181
    GATA-N; GATA-type transcription activator, N-terminal

Alternate Mm_Celera

Genomic

  1. AC_000024.1 Alternate Mm_Celera

    Range
    184410037..184419626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)