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    APE_1443.1 hypothetical protein [ Aeropyrum pernix K1 ]

    Gene ID: 1446018, updated on 18-May-2013
    Gene symbol
    APE_1443.1
    Gene description
    hypothetical protein
    Locus tag
    APE_1443.1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Aeropyrum pernix K1 (strain: K1 (= NBRC 100138))
    Lineage
    Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum
    Sequence :
    NC_000854.2 (916489..917031, complement)

    NC_000854.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene small conductance mechanosensitive channel MscS Neighboring gene hypothetical protein Neighboring gene 50S ribosomal protein L37 Neighboring gene exosome complex RNA-binding protein Rrp42 Neighboring gene exosome complex exonuclease Rrp41

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Characterization of a whole set of tRNA molecules in an aerobic hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1. Yamazaki S, et al. DNA Res, 2005. PMID 16769697.
    2. Proteome analysis of an aerobic hyperthermophilic crenarchaeon, Aeropyrum pernix K1. Yamazaki S, et al. Mol Cell Proteomics, 2006 May. PMID 16455681.
    3. Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1. Kawarabayasi Y, et al. DNA Res, 1999 Apr 30. PMID 10382966.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    hypothetical protein

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000854.2

      Range
      916489..917031, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_147946.2 hypothetical protein APE_1443.1 [Aeropyrum pernix K1]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9YC08
      Conserved Domains (1) summary
      COG2136
      Location:2 – 179
      Blast Score: 313
      IMP4; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
    Nucleotide Protein
    Heading Accession and Version
    genomic BA000002.3 BAA80440.2
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9YC08.2 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • 3D structures
        3D structure of a gene
      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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