Format

Send to:

Choose Destination

Gapdhs glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [ Mus musculus (house mouse) ]

Gene ID: 14447, updated on 28-May-2016
Official Symbol
Gapdhsprovided by MGI
Official Full Name
glyceraldehyde-3-phosphate dehydrogenase, spermatogenicprovided by MGI
Primary source
MGI:MGI:95653
See related
Ensembl:ENSMUSG00000061099 Vega:OTTMUSG00000043090
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gapds; Gapd-s
Orthologs
Location:
7; 7 B1
Exon count:
14
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 7 NC_000073.6 (30729777..30744791, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (31514906..31524375, complement)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene ATPase, H+/K+ exchanging, gastric, alpha polypeptide Neighboring gene transmembrane protein 147 Neighboring gene transmembrane protein 147, opposite strand Neighboring gene suprabasin Neighboring gene dermokine

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
glucose metabolic process IEA
Inferred from Electronic Annotation
more info
 
glycolytic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
positive regulation of glycolytic process TAS
Traceable Author Statement
more info
PubMed 
sperm motility IDA
Inferred from Direct Assay
more info
PubMed 
sperm motility IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cilium IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
motile cilium IDA
Inferred from Direct Assay
more info
PubMed 
motile cilium ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
sperm fibrous sheath IDA
Inferred from Direct Assay
more info
PubMed 
sperm principal piece IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
glyceraldehyde-3-phosphate dehydrogenase, testis-specific
Names
GAPDH-2
spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2
spermatogenic glyceraldehyde-3-phosphate dehydrogenase
NP_001277560.1
NP_032111.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290631.1NP_001277560.1  glyceraldehyde-3-phosphate dehydrogenase, testis-specific isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC167978
    Consensus CDS
    CCDS71933.1
    UniProtKB/TrEMBL
    S4R2G5
    Related
    ENSMUSP00000138634, OTTMUSP00000063310, ENSMUST00000182634, OTTMUST00000113074
    Conserved Domains (3) summary
    COG0057
    Location:110440
    GapA; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
    pfam00044
    Location:110256
    Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
    pfam02800
    Location:261418
    Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
  2. NM_008085.2NP_032111.1  glyceraldehyde-3-phosphate dehydrogenase, testis-specific isoform 2

    See identical proteins and their annotated locations for NP_032111.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate first exon compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AC167978
    Consensus CDS
    CCDS21109.1
    UniProtKB/Swiss-Prot
    Q64467
    UniProtKB/TrEMBL
    A0A0R4J0X7
    Related
    ENSMUSP00000074317, OTTMUSP00000063345, ENSMUST00000074758, OTTMUST00000113132
    Conserved Domains (3) summary
    COG0057
    Location:108438
    GapA; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
    pfam00044
    Location:108254
    Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
    pfam02800
    Location:259416
    Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p3 C57BL/6J

    Range
    30729777..30744791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011250435.1XP_011248737.1  

    Conserved Domains (3) summary
    COG0057
    Location:102432
    GapA; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
    pfam00044
    Location:102248
    Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
    pfam02800
    Location:253410
    Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
  2. XM_006539545.2XP_006539608.1  

    Conserved Domains (3) summary
    COG0057
    Location:122452
    GapA; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
    pfam00044
    Location:122268
    Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
    pfam02800
    Location:273430
    Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Alternate Mm_Celera

Genomic

  1. AC_000029.1 Alternate Mm_Celera

    Range
    25311892..25321514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)