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GLT1D1 glycosyltransferase 1 domain containing 1 [ Homo sapiens (human) ]

Gene ID: 144423, updated on 19-Jul-2014
Official Symbol
GLT1D1provided by HGNC
Official Full Name
glycosyltransferase 1 domain containing 1provided by HGNC
Primary source
HGNC:26483
See related
Ensembl:ENSG00000151948; HPRD:08115; Vega:OTTHUMG00000168437
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
See GLT1D1 in Epigenomics, MapViewer
Location:
12q24.33
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 12 NC_000012.12 (128853500..128984968)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (129337985..129469513)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene corneodesmosin-like Neighboring gene uncharacterized LOC100128276 Neighboring gene adenylate kinase 3 pseudogene 6 Neighboring gene NLR family, pyrin domain containing 9 pseudogene Neighboring gene transmembrane protein 132D Neighboring gene uncharacterized LOC283352

NHGRI GWAS Catalog

Description
Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.
NHGRI GWA Catalog

Protein interactions

Protein Gene Interaction Pubs
Envelope surface glycoprotein gp120 env Addition of peripheral sugar residues such as galactose, N-acetylglucosamine, and sialic acid to HIV-1 gp120 is processed by specific glycosyltransferase PubMed

Go to the HIV-1, Human Protein Interaction Database

Markers

Homology

Clone Names

  • FLJ31978

Gene Ontology Provided by GOA

Function Evidence Code Pubs
transferase activity, transferring glycosyl groups IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
glycosyltransferase 1 domain-containing protein 1
Names
glycosyltransferase 1 domain-containing protein 1
NP_653270.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144669.1NP_653270.1  glycosyltransferase 1 domain-containing protein 1 precursor

    See proteins identical to NP_653270.1

    Status: PROVISIONAL

    Source sequence(s)
    AK056540
    Consensus CDS
    CCDS9265.1
    UniProtKB/Swiss-Prot
    Q96MS3
    Related
    ENSP00000281703, OTTHUMP00000238790, ENST00000281703, OTTHUMT00000399741
    Conserved Domains (2) summary
    COG0438
    Location:132260
    Blast Score: 203
    RfaG; Glycosyltransferase [Cell envelope biogenesis, outer membrane]
    cl10013
    Location:144248
    Blast Score: 209
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000012.12 

    Range
    128853500..128984968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005253553.2XP_005253610.1  

    See proteins identical to XP_005253610.1

    UniProtKB/Swiss-Prot
    Q96MS3
    Related
    ENSP00000394692, OTTHUMP00000238789
    Conserved Domains (2) summary
    COG0438
    Location:106340
    Blast Score: 260
    RfaG; Glycosyltransferase [Cell envelope biogenesis, outer membrane]
    cl10013
    Location:67328
    Blast Score: 294
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
  2. XM_006719247.1XP_006719310.1  

    Conserved Domains (2) summary
    COG0438
    Location:106271
    Blast Score: 139
    RfaG; Glycosyltransferase [Cell envelope biogenesis, outer membrane]
    cl10013
    Location:69260
    Blast Score: 168
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
  3. XM_005253554.1XP_005253611.1  

    Conserved Domains (2) summary
    COG0438
    Location:64298
    Blast Score: 277
    RfaG; Glycosyltransferase [Cell envelope biogenesis, outer membrane]
    cl10013
    Location:60286
    Blast Score: 305
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
  4. XM_006719246.1XP_006719309.1  

    Conserved Domains (3) summary
    TIGR04348
    Location:12244
    Blast Score: 114
    TIGR04348; putative glycosyltransferase, TIGR04348 family
    COG0438
    Location:160308
    Blast Score: 229
    RfaG; Glycosyltransferase [Cell envelope biogenesis, outer membrane]
    cl10013
    Location:160296
    Blast Score: 245
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
  5. XM_006719245.1XP_006719308.1  

    Conserved Domains (2) summary
    COG0438
    Location:106321
    Blast Score: 256
    RfaG; Glycosyltransferase [Cell envelope biogenesis, outer membrane]
    cl10013
    Location:67309
    Blast Score: 281
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
  6. XM_006719249.1XP_006719312.1  

    See proteins identical to XP_006719312.1

    Conserved Domains (2) summary
    COG0438
    Location:15204
    Blast Score: 255
    RfaG; Glycosyltransferase [Cell envelope biogenesis, outer membrane]
    cl10013
    Location:13192
    Blast Score: 288
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
  7. XM_006719248.1XP_006719311.1  

    See proteins identical to XP_006719311.1

    Conserved Domains (2) summary
    COG0438
    Location:15204
    Blast Score: 255
    RfaG; Glycosyltransferase [Cell envelope biogenesis, outer membrane]
    cl10013
    Location:13192
    Blast Score: 288
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

Alternate HuRef

Genomic

  1. AC_000144.1 

    Range
    126322934..126454148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018923.2 

    Range
    129157936..129290187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)