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Gabra4 gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4 [ Mus musculus (house mouse) ]

Gene ID: 14397, updated on 1-Aug-2015
Official Symbol
Gabra4provided by MGI
Official Full Name
gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4provided by MGI
Primary source
MGI:MGI:95616
See related
Ensembl:ENSMUSG00000029211; Vega:OTTMUSG00000054261
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gabra-4
Orthologs
See Gabra4 in Epigenomics, MapViewer
Location:
5; 5 C3.2
Exon count:
9
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 5 NC_000071.6 (71569729..71658308, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (71960973..72049547, complement)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2 Neighboring gene cytochrome c oxidase subunit VIIb2 Neighboring gene gamma-aminobutyric acid (GABA) A receptor, subunit beta 1 Neighboring gene predicted gene, 38562 Neighboring gene ribosomal protein L7A pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
GABA-A receptor activity IEA
Inferred from Electronic Annotation
more info
 
chloride channel activity IEA
Inferred from Electronic Annotation
more info
 
extracellular ligand-gated ion channel activity IEA
Inferred from Electronic Annotation
more info
 
ion channel activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
central nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
chloride transport IEA
Inferred from Electronic Annotation
more info
 
gamma-aminobutyric acid signaling pathway IEA
Inferred from Electronic Annotation
more info
 
ion transport IEA
Inferred from Electronic Annotation
more info
 
regulation of response to drug IMP
Inferred from Mutant Phenotype
more info
PubMed 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell junction IEA
Inferred from Electronic Annotation
more info
 
chloride channel complex IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
synapse IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
gamma-aminobutyric acid receptor subunit alpha-4
Names
GABA(A) receptor subunit alpha-4
gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 4

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010251.2NP_034381.1  gamma-aminobutyric acid receptor subunit alpha-4 precursor

    See identical proteins and their annotated locations for NP_034381.1

    Status: VALIDATED

    Source sequence(s)
    AC114826, AK013727
    Consensus CDS
    CCDS39107.1
    UniProtKB/TrEMBL
    Q543Z0
    UniProtKB/Swiss-Prot
    Q9D6F4
    Related
    ENSMUSP00000031121, OTTMUSP00000071391, ENSMUST00000031121, OTTMUST00000134668
    Conserved Domains (3) summary
    pfam02931
    Location:49256
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:263536
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
    TIGR00860
    Location:13539
    LIC; Cation transporter family protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p3 C57BL/6J

    Range
    71569729..71658308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006503734.2XP_006503797.1  

    Conserved Domains (2) summary
    pfam02931
    Location:70132
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:139412
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
  2. XM_006503735.1XP_006503798.1  

    Conserved Domains (2) summary
    pfam02931
    Location:49256
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:263291
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

Alternate Mm_Celera

Genomic

  1. AC_000027.1 Alternate Mm_Celera

    Range
    68834068..68922930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)