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SYT9 synaptotagmin 9 [ Homo sapiens (human) ]

Gene ID: 143425, updated on 8-May-2016
Official Symbol
SYT9provided by HGNC
Official Full Name
synaptotagmin 9provided by HGNC
Primary source
HGNC:HGNC:19265
See related
Ensembl:ENSG00000170743 HPRD:11618; MIM:613528; Vega:OTTHUMG00000165499
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
Location:
11p15.4
Exon count:
14
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 11 NC_000011.10 (7238796..7469045)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (7273181..7490276)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene NLR family, pyrin domain containing 14 Neighboring gene RNA binding motif protein, X-linked-like 2 Neighboring gene microRNA 302e Neighboring gene uncharacterized LOC100506258 Neighboring gene olfactomedin like 1 Neighboring gene PPFIA binding protein 2 Neighboring gene uncharacterized LOC105376535

NHGRI GWAS Catalog

Description
Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
NHGRI GWA Catalog
Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.
NHGRI GWA Catalog
Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ45896

Gene Ontology Provided by GOA

Function Evidence Code Pubs
calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
 
calcium-dependent phospholipid binding IBA
Inferred from Biological aspect of Ancestor
more info
 
clathrin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
identical protein binding IEA
Inferred from Electronic Annotation
more info
 
syntaxin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
calcium ion-regulated exocytosis of neurotransmitter IBA
Inferred from Biological aspect of Ancestor
more info
 
positive regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 
regulation of calcium ion-dependent exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
 
regulation of insulin secretion IEA
Inferred from Electronic Annotation
more info
 
vesicle fusion IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
cell junction IEA
Inferred from Electronic Annotation
more info
 
dense core granule IEA
Inferred from Electronic Annotation
more info
 
exocytic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
secretory granule membrane IEA
Inferred from Electronic Annotation
more info
 
synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
synaptotagmin-9
Names
synaptotagmin IX
sytIX

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175733.3NP_783860.1  synaptotagmin-9

    See identical proteins and their annotated locations for NP_783860.1

    Status: VALIDATED

    Source sequence(s)
    AC107884, BC046367
    Consensus CDS
    CCDS7778.1
    UniProtKB/Swiss-Prot
    Q86SS6
    Related
    ENSP00000324419, OTTHUMP00000229976, ENST00000318881, OTTHUMT00000384483
    Conserved Domains (2) summary
    cd08403
    Location:354487
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
    cl14603
    Location:221345
    C2; C2 domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p2 Primary Assembly

    Range
    7238796..7469045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011519902.1XP_011518204.1  

    Conserved Domains (2) summary
    cd08403
    Location:322455
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
    cl14603
    Location:189313
    C2; C2 domain
  2. XM_011519901.1XP_011518203.1  

    Conserved Domains (2) summary
    cd08403
    Location:354487
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
    cl14603
    Location:221345
    C2; C2 domain
  3. XM_005252795.2XP_005252852.1  

    Conserved Domains (2) summary
    cd08403
    Location:354487
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
    cl14603
    Location:221345
    C2; C2 domain
  4. XM_011519900.1XP_011518202.1  

    Conserved Domains (2) summary
    cd08403
    Location:354487
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
    cl14603
    Location:221345
    C2; C2 domain
  5. XM_011519903.1XP_011518205.1  

    Conserved Domains (2) summary
    cd08403
    Location:354487
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
    cl14603
    Location:221345
    C2; C2 domain
  6. XM_011519904.1XP_011518206.1  

    Conserved Domains (2) summary
    cd08403
    Location:354487
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
    cl14603
    Location:221345
    C2; C2 domain
  7. XM_011519905.1XP_011518207.1  

    Conserved Domains (1) summary
    cl14603
    Location:221345
    C2; C2 domain
  8. XM_011519907.1XP_011518209.1  

    Conserved Domains (1) summary
    cl14603
    Location:221345
    C2; C2 domain
  9. XM_011519906.1XP_011518208.1  

    Related
    ENSP00000432141, OTTHUMP00000229978, ENST00000524820, OTTHUMT00000384485
    Conserved Domains (1) summary
    cl14603
    Location:221345
    C2; C2 domain

Alternate CHM1_1.1

Genomic

  1. NC_018922.2 Alternate CHM1_1.1

    Range
    7272108..7489194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)