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GEI7407_3382 DNA-(apurinic or apyrimidinic site) lyase, Formamidopyrimidine-DNA glycosylase [ Geitlerinema sp. PCC 7407 ]

Gene ID: 14139397, discontinued on 4-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
GEI7407_3382
Gene description
DNA-(apurinic or apyrimidinic site) lyase, Formamidopyrimidine-DNA glycosylase
Locus tag
GEI7407_3382
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Geitlerinema sp. PCC 7407 (strain: PCC 7407)
Lineage
Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_019703.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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  • IMG reference gene:2503609396

General protein information

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Names
DNA-(apurinic or apyrimidinic site) lyase, Formamidopyrimidine-DNA glycosylase
YP_007110901.1
  • PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; Zinc finger found in FPG and IleRS
    TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg)
    COGs: COG0266 Formamidopyrimidine-DNA glycosylase
    InterProIPR000214:IPR012319:IPR020629:IPR000191:IPR 015887:IPR015886:IPR010663
    KEGG: cyn:Cyan7425_4178 formamidopyrimidine-DNA glycosylase
    PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding
    PRIAM: DNA-formamidopyrimidine glycosylase
    SPTR: Formamidopyrimidine-DNA glycosylase;
    TIGRFAM: formamidopyrimidine-DNA glycosylase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_019703.1 Reference assembly

    Range
    4134236..4135102 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_007110901.1 DNA-(apurinic or apyrimidinic site) lyase, Formamidopyrimidine-DNA glycosylase [Geitlerinema sp. PCC 7407]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version