Format

Send to:

Choose Destination

FAM65C family with sequence similarity 65 member C [ Homo sapiens (human) ]

Gene ID: 140876, updated on 8-Aug-2016
Official Symbol
FAM65Cprovided by HGNC
Official Full Name
family with sequence similarity 65 member Cprovided by HGNC
Primary source
HGNC:HGNC:16168
See related
Ensembl:ENSG00000042062 HPRD:12757; Vega:OTTHUMG00000032724
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf175; C20orf176
Orthologs
Location:
20q13.13
Exon count:
31
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 20 NC_000020.11 (50586108..50692004, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (49202645..49308277, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, non-receptor type 1 Neighboring gene RNA, 7SL, cytoplasmic 672, pseudogene Neighboring gene microRNA 645 Neighboring gene microRNA 1302-5 Neighboring gene uncharacterized LOC100506175 Neighboring gene ribosomal protein L36 pseudogene 2 Neighboring gene uncharacterized LOC105372659 Neighboring gene par-6 family cell polarity regulator beta Neighboring gene breast carcinoma amplified sequence 4 Neighboring gene thymosin beta 4, X-linked pseudogene 6

Markers

Homology

Clone Names

  • FLJ00360, FLJ32230

Gene Ontology Provided by GOA

Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
Preferred Names
protein FAM65C
Names
family with sequence similarity 65, member C

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_034040.1 RefSeqGene

    Range
    5001..110423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001290268.1NP_001277197.1  protein FAM65C isoform 2

    See identical proteins and their annotated locations for NP_001277197.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate upstream AUG compared to variant 1. The encoded protein (isoform 2) has a longer N-terminus compared to isoform 1.
    Source sequence(s)
    AI056877, AK295781, AK299337, AV703941, BM846795, BX111440, CD558804, CF272670, DC400584
    UniProtKB/TrEMBL
    B7Z3F0, B7Z5S0
  2. NM_080829.3NP_543019.2  protein FAM65C isoform 1

    See identical proteins and their annotated locations for NP_543019.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the shorter protein (isoform 1).
    Source sequence(s)
    AI056877, AK056792, AL133230, AL732057, CA389799, CF272670, CN268262, DC391298, DT932687
    Consensus CDS
    CCDS13431.2
    UniProtKB/Swiss-Prot
    Q96MK2
    Related
    ENSP00000045083, ENST00000045083

RNA

  1. NR_110890.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains an alternate first exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK295781, AK299337, AL353653, BQ446237, BX111440, CD558804, CF272670, DC365439, HY221639, HY285972

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p7 Primary Assembly

    Range
    50586108..50692004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005260294.3XP_005260351.1  

    See identical proteins and their annotated locations for XP_005260351.1

  2. XM_011528578.2XP_011526880.1  

    See identical proteins and their annotated locations for XP_011526880.1

  3. XM_006723713.3XP_006723776.1  

  4. XM_011528579.2XP_011526881.1  

    See identical proteins and their annotated locations for XP_011526881.1

    UniProtKB/Swiss-Prot
    Q96MK2
    Related
    ENSP00000332663, OTTHUMP00000165079, ENST00000327979, OTTHUMT00000257962
  5. XM_011528581.2XP_011526883.1  

    See identical proteins and their annotated locations for XP_011526883.1

    UniProtKB/Swiss-Prot
    Q96MK2
  6. XM_011528580.2XP_011526882.1  

    See identical proteins and their annotated locations for XP_011526882.1

    UniProtKB/Swiss-Prot
    Q96MK2
  7. XM_017027681.1XP_016883170.1  

  8. XM_011528585.2XP_011526887.1  

    Conserved Domains (1) summary
    PHA03089
    Location:433474
    PHA03089; late transcription factor VLTF-4; Provisional
  9. XM_011528584.2XP_011526886.1  

  10. XM_011528586.2XP_011526888.1  

  11. XM_017027682.1XP_016883171.1  

RNA

  1. XR_001754183.1 RNA Sequence

  2. XR_936505.2 RNA Sequence

  3. XR_936506.2 RNA Sequence

Alternate CHM1_1.1

Genomic

  1. NC_018931.2 Alternate CHM1_1.1

    Range
    49107779..49213155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)