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per2 period circadian clock 2 [ Danio rerio (zebrafish) ]

Gene ID: 140633, updated on 15-Jul-2014
Official Symbol
per2provided by ZNC
Official Full Name
period circadian clock 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-011220-2
See related
Ensembl:ENSDARG00000034503; Vega:OTTDARG00000024595
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fj43b09; wu:fj43b09
See per2 in MapViewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
103 current Zv9 (GCF_000002035.4) 2 NC_007113.5 (48423772..48489568, complement)

Chromosome 2 - NC_007113.5Genomic Context describing neighboring genes Neighboring gene integral membrane protein 2Cb Neighboring gene hes family bHLH transcription factor 6 Neighboring gene uncharacterized LOC101883720 Neighboring gene macrophage mannose receptor 1-like

Genomic Sequence:
NC_007113.5 chromosome 2 reference Zv9 Primary Assembly

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
signal transducer activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
entrainment of circadian clock by photoperiod IMP
Inferred from Mutant Phenotype
more info
PubMed 
locomotor rhythm IMP
Inferred from Mutant Phenotype
more info
 
negative regulation of angiogenesis IMP
Inferred from Mutant Phenotype
more info
 
photoperiodism IEP
Inferred from Expression Pattern
more info
PubMed 
response to UV IDA
Inferred from Direct Assay
more info
PubMed 
response to hydrogen peroxide IEP
Inferred from Expression Pattern
more info
PubMed 
response to light stimulus IDA
Inferred from Direct Assay
more info
PubMed 
response to light stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
signal transduction IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
period circadian protein homolog 2
Names
period circadian protein homolog 2
per2a
zper2
period homolog 2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182857.1NP_878277.1  period circadian protein homolog 2

    See proteins identical to NP_878277.1

    Status: PROVISIONAL

    Source sequence(s)
    AY171100
    UniProtKB/TrEMBL
    Q7T1C9
    Related
    ENSDARP00000088777, ENSDART00000098004
    Conserved Domains (4) summary
    cd00130
    Location:413503
    Blast Score: 135
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08226
    Location:10041069
    Blast Score: 84
    DUF1720; Domain of unknown function (DUF1720)
    pfam12114
    Location:11941379
    Blast Score: 551
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:403503
    Blast Score: 156
    PAS_11; PAS domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zv9 Primary Assembly

Genomic

  1. NC_007113.5 

    Range
    48423772..48489568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163551.1XP_005163608.1  

    UniProtKB/TrEMBL
    F1QUT1
    Related
    ENSDARP00000124374, OTTDARP00000020505, ENSDART00000148788, OTTDART00000024895
    Conserved Domains (5) summary
    cd00130
    Location:409499
    Blast Score: 149
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08226
    Location:10031064
    Blast Score: 112
    DUF1720; Domain of unknown function (DUF1720)
    pfam11029
    Location:9321041
    Blast Score: 94
    DAZAP2; DAZ associated protein 2 (DAZAP2)
    pfam12114
    Location:11891374
    Blast Score: 548
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:399499
    Blast Score: 163
    PAS_11; PAS domain
  2. XM_005163550.1XP_005163607.1  

    Conserved Domains (5) summary
    cd00130
    Location:409499
    Blast Score: 149
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08226
    Location:10221083
    Blast Score: 112
    DUF1720; Domain of unknown function (DUF1720)
    pfam11029
    Location:9511060
    Blast Score: 95
    DAZAP2; DAZ associated protein 2 (DAZAP2)
    pfam12114
    Location:12081393
    Blast Score: 546
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:399499
    Blast Score: 163
    PAS_11; PAS domain