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Etv1 ets variant 1 [ Mus musculus (house mouse) ]

Gene ID: 14009, updated on 17-May-2016
Official Symbol
Etv1provided by MGI
Official Full Name
ets variant 1provided by MGI
Primary source
MGI:MGI:99254
See related
Ensembl:ENSMUSG00000004151 Vega:OTTMUSG00000035098
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ER81; Etsrp81
Orthologs
Location:
12 A3-B1; 12 17.99 cM
Exon count:
18
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 12 NC_000078.6 (38779656..38868215)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (39506845..39594802)

Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 30964 Neighboring gene phosphatidylethanolamine binding protein 2 pseudogene Neighboring gene ribosomal protein, large, P0 pseudogene Neighboring gene predicted gene, 34611

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
axon guidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
mechanosensory behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
muscle organ development IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription from RNA polymerase II promoter IBA
Inferred from Biological aspect of Ancestor
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
Preferred Names
ETS translocation variant 1
Names
ets related protein 81
ets variant gene 1
ets-related protein 81

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163154.1NP_001156626.1  ETS translocation variant 1 isoform b

    See identical proteins and their annotated locations for NP_001156626.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents use of an alternate promoter, 5' UTR, and 5' coding region, compared to variant 1. The resulting isoform (b) has a shorter and distinct N-terminus, compared to isoform a.
    Source sequence(s)
    AK032224, CD776508
    Consensus CDS
    CCDS49054.1
    UniProtKB/TrEMBL
    Q8CCR6
    Related
    ENSMUSP00000125676, OTTMUSP00000048764, ENSMUST00000159334, OTTMUST00000089278
    Conserved Domains (2) summary
    pfam00178
    Location:295377
    Ets; Ets-domain
    pfam04621
    Location:21293
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
  2. NM_007960.4NP_031986.1  ETS translocation variant 1 isoform a

    See identical proteins and their annotated locations for NP_031986.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AK032224, AK035914, BY330680, CD776508, CJ173360
    Consensus CDS
    CCDS49053.1
    UniProtKB/Swiss-Prot
    P41164
    UniProtKB/TrEMBL
    Q549J8, Q8CCR6
    Related
    ENSMUSP00000093442, OTTMUSP00000048763, ENSMUST00000095767, OTTMUST00000089277
    Conserved Domains (2) summary
    pfam00178
    Location:335417
    Ets; Ets-domain
    pfam04621
    Location:1333
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000078.6 Reference GRCm38.p3 C57BL/6J

    Range
    38779656..38868215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006514967.2XP_006515030.1  

    UniProtKB/TrEMBL
    E0CZ54
    Related
    ENSMUSP00000125692, OTTMUSP00000048767, ENSMUST00000160856, OTTMUST00000089281
    Conserved Domains (2) summary
    pfam00178
    Location:317399
    Ets; Ets-domain
    pfam04621
    Location:1315
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
  2. XM_006514965.2XP_006515028.1  

    See identical proteins and their annotated locations for XP_006515028.1

    UniProtKB/Swiss-Prot
    P41164
    UniProtKB/TrEMBL
    Q549J8
    Related
    ENSMUSP00000125157, OTTMUSP00000048765, ENSMUST00000162563, OTTMUST00000089279
    Conserved Domains (2) summary
    pfam00178
    Location:335417
    Ets; Ets-domain
    pfam04621
    Location:1333
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
  3. XM_006514964.2XP_006515027.1  

    Conserved Domains (2) summary
    pfam00178
    Location:351433
    Ets; Ets-domain
    pfam04621
    Location:31349
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
  4. XM_006514966.2XP_006515029.1  

    Conserved Domains (2) summary
    pfam00178
    Location:333415
    Ets; Ets-domain
    pfam04621
    Location:31331
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
  5. XM_006514972.2XP_006515035.1  

    Conserved Domains (2) summary
    pfam00178
    Location:204286
    Ets; Ets-domain
    pfam04621
    Location:1202
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
  6. XM_006514968.2XP_006515031.1  

    See identical proteins and their annotated locations for XP_006515031.1

    UniProtKB/TrEMBL
    Q8CCR6
    Conserved Domains (2) summary
    pfam00178
    Location:295377
    Ets; Ets-domain
    pfam04621
    Location:21293
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
  7. XM_006514971.2XP_006515034.1  

    UniProtKB/TrEMBL
    E0CXD2
    Related
    ENSMUSP00000124736, OTTMUSP00000048768, ENSMUST00000161980, OTTMUST00000089282
    Conserved Domains (2) summary
    pfam00178
    Location:277359
    Ets; Ets-domain
    pfam04621
    Location:21275
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
  8. XM_006514970.2XP_006515033.1  

    Conserved Domains (2) summary
    pfam00178
    Location:279361
    Ets; Ets-domain
    pfam04621
    Location:2277
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
  9. XM_006514969.2XP_006515032.1  

    Conserved Domains (2) summary
    pfam00178
    Location:280362
    Ets; Ets-domain
    pfam04621
    Location:21278
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

Alternate Mm_Celera

Genomic

  1. AC_000034.1 Alternate Mm_Celera

    Range
    40201449..40290056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)