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LSM11 LSM11, U7 small nuclear RNA associated [ Homo sapiens (human) ]

Gene ID: 134353, updated on 8-May-2016
Official Symbol
LSM11provided by HGNC
Official Full Name
LSM11, U7 small nuclear RNA associatedprovided by HGNC
Primary source
HGNC:HGNC:30860
See related
Ensembl:ENSG00000155858 HPRD:11289; Vega:OTTHUMG00000130255
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
Location:
5q33.3
Exon count:
4
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 5 NC_000005.10 (157743695..157760709)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (157170755..157183746)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377676 Neighboring gene tRNA-histidine guanylyltransferase 1 like Neighboring gene clathrin interactor 1 Neighboring gene ribosomal protein lateral stalk subunit P2 pseudogene 2

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ13097, FLJ30735, FLJ38273, FLJ41957, FLJ42254

Gene Ontology Provided by GOA

Function Evidence Code Pubs
U7 snRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
U7 snRNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
histone mRNA metabolic process TAS
Traceable Author Statement
more info
 
mRNA 3'-end processing by stem-loop binding and cleavage IBA
Inferred from Biological aspect of Ancestor
more info
 
mRNA 3'-end processing by stem-loop binding and cleavage ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of G1/S transition of mitotic cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
termination of RNA polymerase II transcription TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
U7 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
U7 snRNP ISS
Inferred from Sequence or Structural Similarity
more info
 
histone pre-mRNA 3'end processing complex ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleoplasm TAS
Traceable Author Statement
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with telomerase holoenzyme complex IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
U7 snRNA-associated Sm-like protein LSm11

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173491.3NP_775762.1  U7 snRNA-associated Sm-like protein LSm11

    See identical proteins and their annotated locations for NP_775762.1

    Status: VALIDATED

    Source sequence(s)
    AC026407, AI271367, BC051353, BC126449
    Consensus CDS
    CCDS4342.1
    UniProtKB/Swiss-Prot
    P83369
    Related
    ENSP00000286307, OTTHUMP00000160748, ENST00000286307, OTTHUMT00000252580
    Conserved Domains (1) summary
    cd01739
    Location:159224
    LSm11_M; Like-Sm protein 11, middle domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p2 Primary Assembly

    Range
    157743695..157760709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018916.2 Alternate CHM1_1.1

    Range
    156603404..156620409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)