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Trdmt1 tRNA aspartic acid methyltransferase 1 [ Mus musculus (house mouse) ]

Gene ID: 13434, updated on 8-May-2016
Official Symbol
Trdmt1provided by MGI
Official Full Name
tRNA aspartic acid methyltransferase 1provided by MGI
Primary source
MGI:MGI:1274787
See related
Ensembl:ENSMUSG00000026723 Vega:OTTMUSG00000011229
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dnmt2; Rnmt2
Orthologs
Location:
2; 2 A1
Exon count:
13
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (13509014..13544971, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (13431788..13466291, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene Ras suppressor protein 1 Neighboring gene predicted gene 13270 Neighboring gene cubilin (intrinsic factor-cobalamin receptor) Neighboring gene uncharacterized LOC105244085 Neighboring gene vimentin

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
tRNA (cytosine-5-)-methyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
tRNA methyltransferase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
tRNA methyltransferase activity ISO
Inferred from Sequence Orthology
more info
PubMed 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
methylation IEA
Inferred from Electronic Annotation
more info
 
tRNA methylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
tRNA methylation ISO
Inferred from Sequence Orthology
more info
PubMed 
tRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
tRNA (cytosine(38)-C(5))-methyltransferase
Names
DNA (cytosine-5)-methyltransferase-like protein 2
DNA MTase homolog MmuIIP
DNA methyltransferase 2
DNA methyltransferase homolog MmuIIP
m.MmuIIP
met-2
tRNA (cytosine-5-)-methyltransferase
NP_034197.3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010067.4NP_034197.3  tRNA (cytosine(38)-C(5))-methyltransferase

    See identical proteins and their annotated locations for NP_034197.3

    Status: VALIDATED

    Source sequence(s)
    AL773538, BC087892
    Consensus CDS
    CCDS15695.1
    UniProtKB/Swiss-Prot
    O55055
    UniProtKB/TrEMBL
    Q5I0V6
    Related
    ENSMUSP00000114572, OTTMUSP00000012054, ENSMUST00000124488, OTTMUST00000026356
    Conserved Domains (1) summary
    cd00315
    Location:4391
    Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

    Range
    13509014..13544971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011238948.1XP_011237250.1  

    See identical proteins and their annotated locations for XP_011237250.1

    Conserved Domains (1) summary
    cl17173
    Location:1320
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  2. XM_006497325.2XP_006497388.1  

    Conserved Domains (1) summary
    cl17173
    Location:1301
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  3. XM_006497324.2XP_006497387.1  

    See identical proteins and their annotated locations for XP_006497387.1

    Conserved Domains (1) summary
    cl17173
    Location:1320
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  4. XM_006497326.2XP_006497389.1  

    Conserved Domains (1) summary
    cl17173
    Location:4190
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RNA

  1. XR_373933.2 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000024.1 Alternate Mm_Celera

    Range
    13420290..13454789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)