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Ddb1 damage specific DNA binding protein 1 [ Mus musculus (house mouse) ]

Gene ID: 13194, updated on 8-Dec-2014
Official Symbol
Ddb1provided by MGI
Official Full Name
damage specific DNA binding protein 1provided by MGI
Primary source
MGI:MGI:1202384
See related
Ensembl:ENSMUSG00000024740
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
127kDa; AA408517; p127-Ddb1
See Ddb1 in Epigenomics, MapViewer
Location:
19 centromere; 19 6.66 cM
Exon count:
28
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 19 NC_000085.6 (10605568..10629822)

Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene transmembrane protein 138 Neighboring gene cytochrome b561 family, member A3 Neighboring gene dihydroxyacetone kinase 2 homolog (yeast) Neighboring gene RIKEN cDNA 4930524O05 gene Neighboring gene von Willebrand factor C and EGF domains Neighboring gene pepsinogen 5, group I

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
damaged DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
damaged DNA binding ISO
Inferred from Sequence Orthology
more info
 
contributes_to damaged DNA binding ISO
Inferred from Sequence Orthology
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA repair IEA
Inferred from Electronic Annotation
more info
 
UV-damage excision repair ISO
Inferred from Sequence Orthology
more info
 
Wnt signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
histone H2A monoubiquitination ISO
Inferred from Sequence Orthology
more info
 
negative regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
nucleotide-excision repair IBA
Inferred from Biological aspect of Ancestor
more info
 
proteasome-mediated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
proteasome-mediated ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
 
protein ubiquitination involved in ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
 
regulation of mitotic cell cycle phase transition ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
Cul4-RING E3 ubiquitin ligase complex ISO
Inferred from Sequence Orthology
more info
 
Cul4A-RING E3 ubiquitin ligase complex ISO
Inferred from Sequence Orthology
more info
 
Cul4B-RING E3 ubiquitin ligase complex ISO
Inferred from Sequence Orthology
more info
 
cullin-RING ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
extracellular space ISO
Inferred from Sequence Orthology
more info
 
extracellular vesicular exosome ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
DNA damage-binding protein 1
Names
DNA damage-binding protein 1
DDB p127 subunit
DNA repair protein
UV-damaged DNA-binding factor
damaged-DNA recognition protein 1
damage-specific DNA-binding protein 1
damage-specific DNA-binding protein, DNA repair

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015735.1NP_056550.1  DNA damage-binding protein 1

    See proteins identical to NP_056550.1

    Status: PROVISIONAL

    Source sequence(s)
    AB026432
    Consensus CDS
    CCDS37915.1
    UniProtKB/Swiss-Prot
    Q3U1J4
    Related
    ENSMUSP00000025649, ENSMUST00000025649
    Conserved Domains (3) summary
    COG5161
    Location:131104
    SFT1; Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
    pfam03178
    Location:7891099
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:75546
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000085.6 

    Range
    10605568..10629822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526639.1XP_006526702.1  

    Conserved Domains (3) summary
    COG5161
    Location:131116
    SFT1; Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
    pfam03178
    Location:8011111
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:75558
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

Alternate Mm_Celera

Genomic

  1. AC_000041.1 

    Range
    11301601..11325808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)