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Dach1 dachshund 1 (Drosophila) [ Mus musculus (house mouse) ]

Gene ID: 13134, updated on 28-May-2016
Official Symbol
Dach1provided by MGI
Official Full Name
dachshund 1 (Drosophila)provided by MGI
Primary source
MGI:MGI:1277991
See related
Ensembl:ENSMUSG00000055639 Vega:OTTMUSG00000022525
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dac; Dach
Orthologs
Location:
14 48.25 cM; 14 E3
Exon count:
12
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 14 NC_000080.6 (97786846..98169765, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (98186066..98568762, complement)

Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 33525 Neighboring gene high mobility group box 2 pseudogene Neighboring gene predicted gene, 33583 Neighboring gene predicted gene, 41228 Neighboring gene apoptosis inhibitor 5 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • E130112M23Rik

Gene Ontology Provided by MGI

Process Evidence Code Pubs
cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
development of primary female sexual characteristics IGI
Inferred from Genetic Interaction
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of DNA biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell migration ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell proliferation involved in contact inhibition IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of fibroblast proliferation IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of fibroblast proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of transcription by competitive promoter binding ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription from RNA polymerase II promoter IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of transcription from RNA polymerase II promoter IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of transcription from RNA polymerase II promoter IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
regulation of nuclear cell cycle DNA replication IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated IMP
Inferred from Mutant Phenotype
more info
PubMed 
respiratory gaseous exchange IMP
Inferred from Mutant Phenotype
more info
PubMed 
suckling behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
transcription factor complex IDA
Inferred from Direct Assay
more info
PubMed 
transcription factor complex IPI
Inferred from Physical Interaction
more info
PubMed 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001038610.2NP_001033699.1  dachshund homolog 1 isoform 2

    See identical proteins and their annotated locations for NP_001033699.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon in the central coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
    Source sequence(s)
    AK139060, BC052005, BC059934
    Consensus CDS
    CCDS36993.1
    UniProtKB/Swiss-Prot
    Q9QYB2
    UniProtKB/TrEMBL
    Q3UTV2, Q80WU5
    Related
    ENSMUSP00000064970, OTTMUSP00000025693, ENSMUST00000069334, OTTMUST00000053951
    Conserved Domains (2) summary
    pfam02437
    Location:176275
    Ski_Sno; SKI/SNO/DAC family
    cl21478
    Location:556671
    Mt_ATP-synt_B; Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
  2. NM_007826.3NP_031852.1  dachshund homolog 1 isoform 1

    See identical proteins and their annotated locations for NP_031852.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC126264, AK139060, BC052005, BC059934
    Consensus CDS
    CCDS36994.1
    UniProtKB/Swiss-Prot
    Q9QYB2
    UniProtKB/TrEMBL
    Q3UTV2, Q80WU5
    Related
    ENSMUSP00000071464, OTTMUSP00000025692, ENSMUST00000071533, OTTMUST00000053950
    Conserved Domains (2) summary
    pfam02437
    Location:176275
    Ski_Sno; SKI/SNO/DAC family
    cl21478
    Location:608723
    Mt_ATP-synt_B; Mitochondrial ATP synthase B chain precursor (ATP-synt_B)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000080.6 Reference GRCm38.p3 C57BL/6J

    Range
    97786846..98169765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000036.1 Alternate Mm_Celera

    Range
    96458912..96841302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)