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Csn1s1 casein alpha s1 [ Mus musculus (house mouse) ]

Gene ID: 12990, updated on 28-May-2016
Official Symbol
Csn1s1provided by MGI
Official Full Name
casein alpha s1provided by MGI
Primary source
MGI:MGI:88540
See related
Ensembl:ENSMUSG00000070702 Vega:OTTMUSG00000054070
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Csna; AA959832; AW212882
Orthologs
Location:
5 E1; 5 43.56 cM
Exon count:
34
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 5 NC_000071.6 (87666208..87682578)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (88095249..88111599)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene microRNA 3969 Neighboring gene pleckstrin and Sec7 domain containing 3 pseudogene Neighboring gene casein beta Neighboring gene casein alpha s2-like A

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
extracellular region IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
alpha-S1-casein
Names
alpha-casein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286015.1NP_001272944.1  alpha-S1-casein isoform b precursor

    See identical proteins and their annotated locations for NP_001272944.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a.
    Source sequence(s)
    AK052808, BE335666, M36780
    UniProtKB/Swiss-Prot
    P19228
    UniProtKB/TrEMBL
    Q99JM6
    Conserved Domains (1) summary
    pfam00363
    Location:207293
    Casein; Casein
  2. NM_001286016.1NP_001272945.1  alpha-S1-casein isoform c precursor

    See identical proteins and their annotated locations for NP_001272945.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in an isoform (c) that is shorter than isoform a.
    Source sequence(s)
    AK052808, BE335666, M36780
    Consensus CDS
    CCDS80314.1
    UniProtKB/Swiss-Prot
    P19228
    UniProtKB/TrEMBL
    Q91VV1
    Related
    ENSMUSP00000142794, OTTMUSP00000071255, ENSMUST00000197631, OTTMUST00000134354
    Conserved Domains (1) summary
    pfam00363
    Location:215268
    Casein; Casein
  3. NM_007784.3NP_031810.1  alpha-S1-casein isoform a precursor

    See identical proteins and their annotated locations for NP_031810.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
    Source sequence(s)
    AK052808, BE335666, M36780
    Consensus CDS
    CCDS51534.1
    UniProtKB/Swiss-Prot
    P19228
    Related
    ENSMUSP00000092225, OTTMUSP00000071256, ENSMUST00000094641, OTTMUST00000134355
    Conserved Domains (1) summary
    pfam00363
    Location:215301
    Casein; Casein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p3 C57BL/6J

    Range
    87666208..87682578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000027.1 Alternate Mm_Celera

    Range
    85369865..85382931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)