These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_008676.1 RefSeqGene
- Range
- 5001..95196
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_004369.3 → NP_004360.2 collagen alpha-3(VI) chain isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the full-length isoform (1).
- Source sequence(s)
-
AK092021, AK308451, BC033174, BU687672, BX647500, DC411101, X52022
- Consensus CDS
-
CCDS33412.1
- UniProtKB/TrEMBL
-
D9ZGF2
- UniProtKB/Swiss-Prot
-
P12111
- UniProtKB/TrEMBL
-
Q63HQ4
- UniProtKB/TrEMBL
-
Q8N4Z1
- Related
- ENSP00000295550, OTTHUMP00000195994, ENST00000295550, OTTHUMT00000315790
- Conserved Domains (6) summary
-
- cd00109
Location:3110 – 3162
Blast Score: 247
- KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
- cd01450
Location:2401 – 2543
Blast Score: 212
- vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cd01481
Location:1435 – 1599
Blast Score: 661
- vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
- pfam01391
Location:2316 – 2371
Blast Score: 187
- Collagen; Collagen triple helix repeat (20 copies)
- cl00057
Location:1028 – 1191
Blast Score: 546
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cl00065
Location:2993 – 3061
Blast Score: 98
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
-
NM_057164.4 → NP_476505.3 collagen alpha-3(VI) chain isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks two alternate in-frame exons in the 5' coding region, lacks several exons in the 3' coding region, but contains an alternate 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) is significantly shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK092021, BX647500, DC411101
- Consensus CDS
-
CCDS54439.1
- UniProtKB/TrEMBL
-
Q63HQ4
- Related
- ENSP00000375860, OTTHUMP00000195996, ENST00000392003, OTTHUMT00000315792
- Conserved Domains (2) summary
-
- cd01481
Location:37 – 201
Blast Score: 626
- vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
- cl00057
Location:231 – 395
Blast Score: 536
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
-
NM_057165.4 → NP_476506.3 collagen alpha-3(VI) chain isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region, lacks several exons in the 3' coding region, but contains an alternate 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (3) is significantly shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK304870, BX647500, DC411101
- Consensus CDS
-
CCDS33411.2
- UniProtKB/TrEMBL
-
B4E3U5
- UniProtKB/TrEMBL
-
E9PGQ9
- UniProtKB/TrEMBL
-
Q63HQ4
- Related
- ENSP00000375861, OTTHUMP00000195995, ENST00000392004, OTTHUMT00000315791
- Conserved Domains (2) summary
-
- cd01481
Location:238 – 402
Blast Score: 624
- vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
- cl00057
Location:432 – 596
Blast Score: 534
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
-
NM_057166.4 → NP_476507.3 collagen alpha-3(VI) chain isoform 4 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks three alternate in-frame exons in the 5' coding region, compared to variant 1, resulting in an isoform (4) that is shorter than isoform 1.
- Source sequence(s)
-
BC144595, BC171790, BU687672, DC411101
- Consensus CDS
-
CCDS33410.2
- UniProtKB/TrEMBL
-
B7ZMJ7
- UniProtKB/TrEMBL
-
B7ZW00
- UniProtKB/TrEMBL
-
E9PFQ6
- Related
- ENSP00000418285, OTTHUMP00000213923, ENST00000472056, OTTHUMT00000353032
- Conserved Domains (6) summary
-
- cd00109
Location:2503 – 2555
Blast Score: 245
- KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
- cd01450
Location:1794 – 1936
Blast Score: 214
- vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cd01481
Location:828 – 992
Blast Score: 662
- vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
- pfam01391
Location:1709 – 1764
Blast Score: 183
- Collagen; Collagen triple helix repeat (20 copies)
- cl00057
Location:229 – 392
Blast Score: 480
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cl00065
Location:2386 – 2454
Blast Score: 98
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
-
NM_057167.3 → NP_476508.2 collagen alpha-3(VI) chain isoform 5 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (5) that is shorter than isoform 1.
- Source sequence(s)
-
AK092021, AK308451, BC033174, BU687672, BX647500, DC411101, X52022
- Consensus CDS
-
CCDS33409.1
- UniProtKB/Swiss-Prot
-
P12111
- UniProtKB/TrEMBL
-
Q63HQ4
- UniProtKB/TrEMBL
-
Q8N4Z1
- Related
- ENSP00000315873, ENST00000353578
- Conserved Domains (6) summary
-
- cd00109
Location:2904 – 2956
Blast Score: 247
- KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
- cd01450
Location:2195 – 2337
Blast Score: 212
- vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cd01481
Location:1229 – 1393
Blast Score: 660
- vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
- pfam01391
Location:2110 – 2165
Blast Score: 186
- Collagen; Collagen triple helix repeat (20 copies)
- cl00057
Location:432 – 596
Blast Score: 546
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cl00065
Location:2787 – 2855
Blast Score: 98
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000002.11 Reference GRCh37.p5 Primary Assembly
- Range
- 238232655..238322850, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000134.1 Alternate HuRef
- Range
- 230024688..230114910, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)