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C22orf39 chromosome 22 open reading frame 39 [ Homo sapiens (human) ]

Gene ID: 128977, updated on 8-May-2016
Official Symbol
C22orf39provided by HGNC
Official Full Name
chromosome 22 open reading frame 39provided by HGNC
Primary source
HGNC:HGNC:27012
See related
Ensembl:ENSG00000242259 HPRD:14041
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
Location:
22q11.21
Exon count:
4
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 22 NC_000022.11 (19440886..19448232, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (19428409..19435755, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372859 Neighboring gene histone cell cycle regulator Neighboring gene uncharacterized LOC105372860 Neighboring gene mitochondrial ribosomal protein L40 Neighboring gene ubiquitin fusion degradation 1 like (yeast) Neighboring gene cell division cycle 45

Products Interactant Other Gene Complex Source Pubs Description

Markers

Clone Names

  • MGC74441, DKFZp686I08210

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166242.1NP_001159714.1  UPF0545 protein C22orf39 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC000068, BC030758
    Consensus CDS
    CCDS54498.1
    UniProtKB/Swiss-Prot
    Q6P5X5
    Related
    ENSP00000439212, ENST00000542103
  2. NM_173793.4NP_776154.3  UPF0545 protein C22orf39 isoform 1

    See identical proteins and their annotated locations for NP_776154.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC000068, AI379685, AK290073, BX337505
    Consensus CDS
    CCDS33599.2
    UniProtKB/Swiss-Prot
    Q6P5X5
    Related
    ENSP00000479673, ENST00000611555

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p2 Primary Assembly

    Range
    19440886..19448232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018933.2 Alternate CHM1_1.1

    Range
    19427982..19435325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)