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Col8a1 collagen, type VIII, alpha 1 [ Mus musculus (house mouse) ]

Gene ID: 12837, updated on 28-May-2016
Official Symbol
Col8a1provided by MGI
Official Full Name
collagen, type VIII, alpha 1provided by MGI
Primary source
MGI:MGI:88463
See related
Ensembl:ENSMUSG00000068196 Vega:OTTMUSG00000021291
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Col8a-1
Orthologs
Location:
16; 16 C1.1
Exon count:
4
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 16 NC_000082.6 (57624256..57754737, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (57624369..57754850, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4921517D16 gene Neighboring gene cms small ribosomal subunit 1 Neighboring gene filamin A interacting protein 1-like Neighboring gene chaperonin containing Tcp1, subunit 8 (theta) pseudogene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene ribosomal protein 7A, pseudogene 4

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
angiogenesis IEA
Inferred from Electronic Annotation
more info
 
camera-type eye morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
epithelial cell proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of cell-substrate adhesion IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
basement membrane IEA
Inferred from Electronic Annotation
more info
 
collagen trimer IEA
Inferred from Electronic Annotation
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with extracellular matrix ISO
Inferred from Sequence Orthology
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
proteinaceous extracellular matrix IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
collagen alpha-1(VIII) chain
Names
procollagen type VIII alpha 1
procollagen, type VIII, alpha 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007739.2NP_031765.2  collagen alpha-1(VIII) chain precursor

    See identical proteins and their annotated locations for NP_031765.2

    Status: VALIDATED

    Source sequence(s)
    AC162943, AK046370, AV334655, BY289783
    Consensus CDS
    CCDS37367.1
    UniProtKB/Swiss-Prot
    Q00780
    Related
    ENSMUSP00000086745, OTTMUSP00000023567, ENSMUST00000089332, OTTMUST00000050477
    Conserved Domains (2) summary
    smart00110
    Location:609744
    C1Q; Complement component C1q domain
    pfam01391
    Location:445502
    Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p3 C57BL/6J

    Range
    57624256..57754737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000038.1 Alternate Mm_Celera

    Range
    57949273..58079512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)