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Col11a2 collagen, type XI, alpha 2 [ Mus musculus (house mouse) ]

Gene ID: 12815, updated on 8-May-2016
Official Symbol
Col11a2provided by MGI
Official Full Name
collagen, type XI, alpha 2provided by MGI
Primary source
MGI:MGI:88447
See related
Ensembl:ENSMUSG00000024330 Vega:OTTMUSG00000022512
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This gene encodes the alpha-2 subunit of type XI collagen, one of the low abundance fibrillar collagens found in cartilage. The encoded protein, in association with other collagen subunits, forms a heterotrimeric type XI procollagen that may undergo proteolytic processing similar to the alpha-1 subunit. Mice lacking the encoded protein exhibit a mild phenotype similar to nonocular Stickler syndrome, otospondylomegaepiphyseal dysplasia (OSMED) as well as a nonsyndromic form of deafness called DFNA13. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2015]
Orthologs
Location:
17 B1; 17 17.98 cM
Exon count:
68
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 17 NC_000083.6 (34038486..34066684)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (34176382..34203187)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 (zinc transporter), member 7 Neighboring gene retinoid X receptor beta Neighboring gene cDNA sequence BC051537 Neighboring gene histocompatibility 2, P region alpha locus Neighboring gene histocompatibility 2, O region alpha locus

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
extracellular matrix structural constituent IC
Inferred by Curator
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cartilage development ISO
Inferred from Sequence Orthology
more info
 
chondrocyte differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
collagen fibril organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
collagen fibril organization ISO
Inferred from Sequence Orthology
more info
 
ossification ISO
Inferred from Sequence Orthology
more info
 
palate development ISO
Inferred from Sequence Orthology
more info
 
sensory perception of sound IMP
Inferred from Mutant Phenotype
more info
PubMed 
sensory perception of sound ISO
Inferred from Sequence Orthology
more info
 
skeletal system development ISO
Inferred from Sequence Orthology
more info
 
skeletal system morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
soft palate development ISO
Inferred from Sequence Orthology
more info
 
tissue homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
collagen trimer IDA
Inferred from Direct Assay
more info
PubMed 
collagen type XI trimer ISO
Inferred from Sequence Orthology
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
proteinaceous extracellular matrix IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
collagen alpha-2(XI) chain
Names
procollagen, type XI, alpha 2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001317722.1NP_001304651.1  collagen alpha-2(XI) chain isoform 1 precursor

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    CR974462
    UniProtKB/Swiss-Prot
    Q64739
    Conserved Domains (3) summary
    pfam01391
    Location:12701328
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15191714
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  2. NM_009926.2NP_034056.1  collagen alpha-2(XI) chain isoform 2 precursor

    See identical proteins and their annotated locations for NP_034056.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) contains one alternate in-frame exon and lacks two exons in the 5' coding region, compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
    Source sequence(s)
    CR974462
    Consensus CDS
    CCDS28640.1
    UniProtKB/Swiss-Prot
    Q64739
    UniProtKB/TrEMBL
    I7HJS8
    Related
    ENSMUSP00000084772, OTTMUSP00000025657, ENSMUST00000087497, OTTMUST00000053896
    Conserved Domains (3) summary
    pfam01391
    Location:12051263
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14541649
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p3 C57BL/6J

    Range
    34038486..34066684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006523559.2XP_006523622.1  

    See identical proteins and their annotated locations for XP_006523622.1

    Conserved Domains (3) summary
    pfam01391
    Location:13751433
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:16241819
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  2. XM_006523562.2XP_006523625.1  

    See identical proteins and their annotated locations for XP_006523625.1

    Conserved Domains (3) summary
    pfam01391
    Location:13151373
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15641759
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  3. XM_006523560.2XP_006523623.1  

    See identical proteins and their annotated locations for XP_006523623.1

    Conserved Domains (3) summary
    pfam01391
    Location:13541412
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:16031798
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  4. XM_006523563.2XP_006523626.1  

    See identical proteins and their annotated locations for XP_006523626.1

    Conserved Domains (3) summary
    pfam01391
    Location:12941352
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15431738
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  5. XM_006523564.2XP_006523627.1  

    See identical proteins and their annotated locations for XP_006523627.1

    UniProtKB/Swiss-Prot
    Q64739
    Conserved Domains (3) summary
    pfam01391
    Location:12911349
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15401735
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  6. XM_006523568.2XP_006523631.1  

    See identical proteins and their annotated locations for XP_006523631.1

    Conserved Domains (3) summary
    pfam01391
    Location:12311289
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14801675
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  7. XM_006523565.2XP_006523628.1  

    Conserved Domains (3) summary
    pfam01391
    Location:12701328
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15191714
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  8. XM_006523569.2XP_006523632.1  

    See identical proteins and their annotated locations for XP_006523632.1

    UniProtKB/Swiss-Prot
    Q64739
    Related
    ENSMUSP00000109890, ENSMUST00000114252
    Conserved Domains (3) summary
    pfam01391
    Location:12101268
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14591654
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  9. XM_006523561.2XP_006523624.1  

    See identical proteins and their annotated locations for XP_006523624.1

    Conserved Domains (4) summary
    pfam01391
    Location:13491407
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15981793
    COLFI; Fibrillar collagens C-terminal domain
    PRK07764
    Location:282662
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  10. XM_006523566.2XP_006523629.1  

    See identical proteins and their annotated locations for XP_006523629.1

    UniProtKB/Swiss-Prot
    Q64739
    Conserved Domains (3) summary
    pfam01391
    Location:12651323
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15141709
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  11. XM_006523567.2XP_006523630.1  

    See identical proteins and their annotated locations for XP_006523630.1

    UniProtKB/Swiss-Prot
    Q64739
    Related
    ENSMUSP00000109893, ENSMUST00000114255
    Conserved Domains (3) summary
    pfam01391
    Location:12441302
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14931688
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  12. XM_006523570.2XP_006523633.1  

    See identical proteins and their annotated locations for XP_006523633.1

    UniProtKB/Swiss-Prot
    Q64739
    Conserved Domains (3) summary
    pfam01391
    Location:11841242
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14331628
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  13. XM_006523571.1XP_006523634.1  

    See identical proteins and their annotated locations for XP_006523634.1

    Conserved Domains (2) summary
    pfam01391
    Location:897955
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:11461341
    COLFI; Fibrillar collagens C-terminal domain

RNA

  1. XR_385275.2 RNA Sequence

  2. XR_385276.2 RNA Sequence

Reference GRCm38.p3 129X1/SvJ

Genomic

  1. NT_039662.3 Reference GRCm38.p3 129X1/SvJ

    Range
    287424..315620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006525282.2XP_006525345.1  

    See identical proteins and their annotated locations for XP_006525345.1

    Conserved Domains (3) summary
    pfam01391
    Location:13751433
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:16241819
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  2. XM_006525285.2XP_006525348.1  

    See identical proteins and their annotated locations for XP_006525348.1

    Conserved Domains (3) summary
    pfam01391
    Location:13151373
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15641759
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  3. XM_006525283.2XP_006525346.1  

    See identical proteins and their annotated locations for XP_006525346.1

    Conserved Domains (3) summary
    pfam01391
    Location:13541412
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:16031798
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  4. XM_006525286.2XP_006525349.1  

    See identical proteins and their annotated locations for XP_006525349.1

    Conserved Domains (3) summary
    pfam01391
    Location:12941352
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15431738
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  5. XM_006525287.2XP_006525350.1  

    See identical proteins and their annotated locations for XP_006525350.1

    UniProtKB/Swiss-Prot
    Q64739
    Conserved Domains (3) summary
    pfam01391
    Location:12911349
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15401735
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  6. XM_006525291.2XP_006525354.1  

    See identical proteins and their annotated locations for XP_006525354.1

    Conserved Domains (3) summary
    pfam01391
    Location:12311289
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14801675
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  7. XM_006525288.2XP_006525351.1  

    Conserved Domains (3) summary
    pfam01391
    Location:12701328
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15191714
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  8. XM_006525292.2XP_006525355.1  

    See identical proteins and their annotated locations for XP_006525355.1

    UniProtKB/Swiss-Prot
    Q64739
    Conserved Domains (3) summary
    pfam01391
    Location:12101268
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14591654
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  9. XM_006525284.2XP_006525347.1  

    See identical proteins and their annotated locations for XP_006525347.1

    Conserved Domains (4) summary
    pfam01391
    Location:13491407
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15981793
    COLFI; Fibrillar collagens C-terminal domain
    PRK07764
    Location:282662
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  10. XM_006525289.2XP_006525352.1  

    See identical proteins and their annotated locations for XP_006525352.1

    UniProtKB/Swiss-Prot
    Q64739
    Conserved Domains (3) summary
    pfam01391
    Location:12651323
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15141709
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  11. XM_006525290.2XP_006525353.1  

    See identical proteins and their annotated locations for XP_006525353.1

    UniProtKB/Swiss-Prot
    Q64739
    Conserved Domains (3) summary
    pfam01391
    Location:12441302
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14931688
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  12. XM_006525293.2XP_006525356.1  

    See identical proteins and their annotated locations for XP_006525356.1

    UniProtKB/Swiss-Prot
    Q64739
    Conserved Domains (3) summary
    pfam01391
    Location:11841242
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14331628
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  13. XM_006525294.1XP_006525357.1  

    See identical proteins and their annotated locations for XP_006525357.1

    Conserved Domains (2) summary
    pfam01391
    Location:897955
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:11461341
    COLFI; Fibrillar collagens C-terminal domain

RNA

  1. XR_385927.2 RNA Sequence

  2. XR_385928.2 RNA Sequence

Reference GRCm38.p3 NOD/MrkTac

Genomic

  1. NT_187027.1 Reference GRCm38.p3 NOD/MrkTac

    Range
    349587..377271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006537241.2XP_006537304.1  

    See identical proteins and their annotated locations for XP_006537304.1

    Conserved Domains (3) summary
    pfam01391
    Location:12941353
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15401735
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  2. XM_011251284.1XP_011249586.1  

    See identical proteins and their annotated locations for XP_011249586.1

    Conserved Domains (3) summary
    pfam01391
    Location:11871246
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14331628
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  3. XM_011251283.1XP_011249585.1  

    See identical proteins and their annotated locations for XP_011249585.1

    Conserved Domains (2) summary
    pfam01391
    Location:526584
    Collagen; Collagen triple helix repeat (20 copies)
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  4. XM_006537238.2XP_006537301.1  

    See identical proteins and their annotated locations for XP_006537301.1

    Conserved Domains (1) summary
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  5. XM_006537239.2XP_006537302.1  

    See identical proteins and their annotated locations for XP_006537302.1

    Conserved Domains (1) summary
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

Reference GRCm38.p3 NOD/ShiLtJ

Genomic

  1. NT_187004.1 Reference GRCm38.p3 NOD/ShiLtJ

    Range
    349699..377383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006536508.2XP_006536571.1  

    See identical proteins and their annotated locations for XP_006536571.1

    Conserved Domains (3) summary
    pfam01391
    Location:12941353
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15401735
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  2. XM_011238127.1XP_011236429.1  

    See identical proteins and their annotated locations for XP_011236429.1

    Conserved Domains (3) summary
    pfam01391
    Location:11871246
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14331628
    COLFI; Fibrillar collagens C-terminal domain
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  3. XM_011238123.1XP_011236425.1  

    See identical proteins and their annotated locations for XP_011236425.1

    Conserved Domains (2) summary
    pfam01391
    Location:526584
    Collagen; Collagen triple helix repeat (20 copies)
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  4. XM_006536505.2XP_006536568.1  

    See identical proteins and their annotated locations for XP_006536568.1

    Conserved Domains (1) summary
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
  5. XM_006536506.2XP_006536569.1  

    See identical proteins and their annotated locations for XP_006536569.1

    Conserved Domains (1) summary
    cd00110
    Location:59210
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

Alternate Mm_Celera

Genomic

  1. AC_000039.1 Alternate Mm_Celera

    Range
    36785570..36812404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)