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Cnbp cellular nucleic acid binding protein [ Mus musculus (house mouse) ]

Gene ID: 12785, updated on 8-May-2016
Official Symbol
Cnbpprovided by MGI
Official Full Name
cellular nucleic acid binding proteinprovided by MGI
Primary source
MGI:MGI:88431
See related
Ensembl:ENSMUSG00000030057 Vega:OTTMUSG00000023465
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Znf9; Cnbp1; AA408710
Orthologs
Location:
6; 6 D1-D2
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 6 NC_000072.6 (87842615..87851106, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (87792609..87801100, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene RAB43, member RAS oncogene family Neighboring gene ISY1 splicing factor homolog Neighboring gene coatomer protein complex, subunit gamma 1 Neighboring gene 5-hydroxymethylcytosine (hmC) binding, ES cell specific Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
single-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
single-stranded RNA binding ISO
Inferred from Sequence Orthology
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
NOT nucleus IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
cellular nucleic acid-binding protein
Names
cellular nucleic acid binding protein 1
zinc finger protein 9

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109745.1NP_001103215.1  cellular nucleic acid-binding protein isoform 2

    See identical proteins and their annotated locations for NP_001103215.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate splice site in the CDS, as compared to variant 1. The resulting isoform (2) lacks an internal segment and has identical N- and C-termini, as compared to isoform 1.
    Source sequence(s)
    AK078427, AK144740, AK159810, CJ088264
    UniProtKB/Swiss-Prot
    P53996
    UniProtKB/TrEMBL
    Q3U5V2, Q5QJQ9
    Conserved Domains (1) summary
    PTZ00368
    Location:47165
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
  2. NM_001109746.1NP_001103216.1  cellular nucleic acid-binding protein isoform 3

    See identical proteins and their annotated locations for NP_001103216.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has two alternate splice sites in the CDS, as compared to variant 1. The resulting isoform (3) differs in the middle region and has identical N- and C-termini, as compared to isoform 1.
    Source sequence(s)
    AK144740, AK151961, CJ088264
    UniProtKB/TrEMBL
    Q3U935, Q5QJQ9
    Related
    ENSMUSP00000109249, OTTMUSP00000073754, ENSMUST00000113619, OTTMUST00000141012
    Conserved Domains (1) summary
    PTZ00368
    Location:47164
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
  3. NM_013493.3NP_038521.1  cellular nucleic acid-binding protein isoform 1

    See identical proteins and their annotated locations for NP_038521.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AK144740, BC058723, CJ088264
    Consensus CDS
    CCDS51841.1
    UniProtKB/Swiss-Prot
    P53996
    UniProtKB/TrEMBL
    Q5QJQ9
    Related
    ENSMUSP00000032138, ENSMUST00000032138
    Conserved Domains (1) summary
    PTZ00368
    Location:54172
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p3 C57BL/6J

    Range
    87842615..87851106 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505479.1XP_006505542.1  

    See identical proteins and their annotated locations for XP_006505542.1

    UniProtKB/Swiss-Prot
    P53996
    UniProtKB/TrEMBL
    Q3ULK8
    Related
    ENSMUSP00000145274, OTTMUSP00000027487, ENSMUST00000204653, OTTMUST00000057063
    Conserved Domains (1) summary
    PTZ00368
    Location:54171
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
  2. XM_011241200.1XP_011239502.1  

    See identical proteins and their annotated locations for XP_011239502.1

    Conserved Domains (1) summary
    PTZ00368
    Location:48166
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
  3. XM_011241201.1XP_011239503.1  

    See identical proteins and their annotated locations for XP_011239503.1

    UniProtKB/TrEMBL
    A0A0N4SVS6
    Related
    ENSMUSP00000145227, OTTMUSP00000073753, ENSMUST00000204890, OTTMUST00000141011
    Conserved Domains (1) summary
    PTZ00368
    Location:48165
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

Alternate Mm_Celera

Genomic

  1. AC_000028.1 Alternate Mm_Celera

    Range
    89779944..89788435 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)