These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001127361.1 → NP_001120833.1 E3 ubiquitin-protein ligase RNF19B isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate splice junction at the 5' end of the last exon, that causes a frameshift. The resulting isoform (b) is shorter and has a distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AA194237, AK131439, AL031602, BC062374
- Consensus CDS
-
CCDS44107.1
- UniProtKB/TrEMBL
-
E9PAW6
- UniProtKB/Swiss-Prot
-
Q6ZMZ0
- Related
- ENSP00000349482, OTTHUMP00000035903, ENST00000356990, OTTHUMT00000092184
- Conserved Domains (3) summary
-
- smart00647
Location:187 – 251
Blast Score: 211
- IBR; In Between Ring fingers
- pfam01485
Location:187 – 251
Blast Score: 172
- IBR; IBR domain
- cl15348
Location:118 – 166
Blast Score: 84
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
-
NM_153341.2 → NP_699172.2 E3 ubiquitin-protein ligase RNF19B isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (a).
- Source sequence(s)
-
AA194237, AK131439, AL031602, BC113560
- Consensus CDS
-
CCDS372.2
- UniProtKB/Swiss-Prot
-
Q6ZMZ0
- Related
- ENSP00000362555, OTTHUMP00000004133, ENST00000373456, OTTHUMT00000011465
- Conserved Domains (3) summary
-
- smart00647
Location:187 – 251
Blast Score: 213
- IBR; In Between Ring fingers
- pfam01485
Location:187 – 251
Blast Score: 174
- IBR; IBR domain
- cl15348
Location:118 – 166
Blast Score: 85
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000001.10 Reference GRCh37.p5 Primary Assembly
- Range
- 33402050..33430286, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000133.1 Alternate HuRef
- Range
- 31517104..31545246, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)