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    truB tRNA pseudouridine synthase B [ Escherichia coli str. 'clone D i14' ]

    Gene ID: 12666330, updated on 30-Mar-2013
    Gene symbol
    truB
    Gene description
    tRNA pseudouridine synthase B
    Locus tag
    i14_3610
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. 'clone D i14' (strain: clone D i14)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia
    Sequence :
    NC_017652.1 (3616280..3617224, complement)

    NC_017652.1Genomic Context describing neighboring genes Neighboring gene polynucleotide phosphorylase/polyadenylase Neighboring gene 30S ribosomal protein S15 Neighboring gene ribosome-binding factor A Neighboring gene translation initiation factor IF-2 Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Rates of mutation and host transmission for an Escherichia coli clone over 3 years. Reeves PR, et al. PLoS One, 2011. PMID 22046404.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    tRNA pseudouridine synthase B

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_017652.1

      Range
      3616280..3617224, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_006155687.1 tRNA pseudouridine synthase B [Escherichia coli str. 'clone D i14']

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      G7RJW9
      Conserved Domains (3) summary
      cd02573
      Location:13 – 222
      Blast Score: 902
      PseudoU_synth_EcTruB; Pseudouridine synthase, Escherichia coli TruB like
      pfam09157
      Location:252 – 309
      Blast Score: 199
      TruB-C_2; Pseudouridine synthase II TruB, C-terminal
      PRK05033
      Location:3 – 314
      Blast Score: 1602
      truB; tRNA pseudouridine synthase B; Provisional
    Nucleotide Protein
    Heading Accession and Version
    genomic CP002212.1 AER91063.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

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