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Cebpz CCAAT/enhancer binding protein zeta [ Mus musculus (house mouse) ]

Gene ID: 12607, updated on 8-May-2016
Official Symbol
Cebpzprovided by MGI
Official Full Name
CCAAT/enhancer binding protein zetaprovided by MGI
Primary source
MGI:MGI:109386
See related
Ensembl:ENSMUSG00000024081
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cbf; CBF2; AI848081; Cebpa-rs1
Orthologs
Location:
17; 17 E3
Exon count:
16
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 17 NC_000083.6 (78919003..78937070, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (79318343..79336410, complement)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 26637 Neighboring gene sulfotransferase family, cytosolic, 6B, member 1 Neighboring gene predicted gene, 41621 Neighboring gene CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand Neighboring gene NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7 Neighboring gene protein kinase D3 Neighboring gene predicted gene, 41622

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC36087

Gene Ontology Provided by MGI

Process Evidence Code Pubs
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
CCAAT/enhancer-binding protein zeta
Names
CCAAT-binding factor
CCAAT-box-binding transcription factor
CCAAT/enhancer binding protein alpha (C/EBP) related sequence 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024806.2NP_001019977.1  CCAAT/enhancer-binding protein zeta

    See identical proteins and their annotated locations for NP_001019977.1

    Status: VALIDATED

    Source sequence(s)
    AI848081, AK017537, AK158771, BY077658
    Consensus CDS
    CCDS28981.1
    UniProtKB/Swiss-Prot
    P53569
    UniProtKB/TrEMBL
    A0A0R4J046
    Related
    ENSMUSP00000024885, ENSMUST00000024885
    Conserved Domains (3) summary
    COG5593
    Location:179987
    COG5593; Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
    pfam03914
    Location:522733
    CBF; CBF/Mak21 family
    cl17018
    Location:273436
    FANC; Fanconi anemia ID complex proteins FANCI and FANCD2

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p3 C57BL/6J

    Range
    78919003..78937070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006523558.2XP_006523621.1  

    Conserved Domains (1) summary
    pfam03914
    Location:1182
    CBF; CBF/Mak21 family

Alternate Mm_Celera

Genomic

  1. AC_000039.1 Alternate Mm_Celera

    Range
    83237268..83257640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_009882.2: Suppressed sequence

    Description
    NM_009882.2: This RefSeq was permanently suppressed because it is a nonsense-mediated decay (NMD) candidate.