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Cd5 CD5 antigen [ Mus musculus (house mouse) ]

Gene ID: 12507, updated on 28-May-2016
Official Symbol
Cd5provided by MGI
Official Full Name
CD5 antigenprovided by MGI
Primary source
MGI:MGI:88340
See related
Ensembl:ENSMUSG00000024669
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ly-1; Ly-A; Ly-12; Lyt-1
Orthologs
Location:
19 A; 19 7.16 cM
Exon count:
12
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 19 NC_000085.6 (10718107..10739026, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (10792633..10813464, complement)

Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2210404E10 gene Neighboring gene vacuolar protein sorting 37C Neighboring gene predicted gene, 41809 Neighboring gene RIKEN cDNA A430093F15 gene Neighboring gene CD6 antigen

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
glycoprotein binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
T cell costimulation IDA
Inferred from Direct Assay
more info
PubMed 
apoptotic signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
spanning component of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
T-cell surface glycoprotein CD5
Names
lymphocyte antigen 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007650.3NP_031676.3  T-cell surface glycoprotein CD5 precursor

    See identical proteins and their annotated locations for NP_031676.3

    Status: VALIDATED

    Source sequence(s)
    AC132247, AI528619, AK143736
    Consensus CDS
    CCDS29586.1
    UniProtKB/Swiss-Prot
    P13379
    UniProtKB/TrEMBL
    Q3UP78
    Related
    ENSMUSP00000025571, ENSMUST00000025571
    Conserved Domains (2) summary
    smart00202
    Location:34133
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:169268
    SRCR; Scavenger receptor cysteine-rich domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000085.6 Reference GRCm38.p3 C57BL/6J

    Range
    10718107..10739026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526621.2XP_006526684.1  

    Conserved Domains (1) summary
    smart00202
    Location:34133
    SR; Scavenger receptor Cys-rich

Alternate Mm_Celera

Genomic

  1. AC_000041.1 Alternate Mm_Celera

    Range
    11417945..11438925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)