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Cd48 CD48 antigen [ Mus musculus (house mouse) ]

Gene ID: 12506, updated on 22-Jul-2014
Official Symbol
Cd48provided by MGI
Official Full Name
CD48 antigenprovided by MGI
Primary source
MGI:88339
See related
Ensembl:ENSMUSG00000015355
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BCM1; BLAST; Bcm-1; BLAST1; SLAMF2; Sgp-60; BLAST-1; MEM-102; AI449234; AW610730
See Cd48 in Epigenomics, MapViewer
Location:
1 H3; 1 79.54 cM
Exon count:
7
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 1 NC_000067.6 (171681421..171705257)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene SLAM family member 7 Neighboring gene microRNA mir-7683 Neighboring gene nuclear encoded tRNA histidine 1 (anticodon ATG) Neighboring gene adaptor-related protein complex 3, sigma 1 subunit pseudogene Neighboring gene signaling lymphocytic activation molecule family member 1

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • , (from )
    ,
  • , (from )
    ,
  • Natural killer cell mediated cytotoxicity, organism-specific biosystem (from KEGG)
    Natural killer cell mediated cytotoxicity, organism-specific biosystemNatural killer (NK) cells are lymphocytes of the innate immune system that are involved in early defenses against both allogeneic (nonself) cells and autologous cells undergoing various forms of stre...
  • Natural killer cell mediated cytotoxicity, conserved biosystem (from KEGG)
    Natural killer cell mediated cytotoxicity, conserved biosystemNatural killer (NK) cells are lymphocytes of the innate immune system that are involved in early defenses against both allogeneic (nonself) cells and autologous cells undergoing various forms of stre...

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
antigen binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
T cell activation IDA
Inferred from Direct Assay
more info
PubMed 
mast cell activation ISO
Inferred from Sequence Orthology
more info
 
signal transduction IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
anchored component of membrane IEA
Inferred from Electronic Annotation
more info
 
anchored component of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
extracellular vesicular exosome ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
membrane raft ISO
Inferred from Sequence Orthology
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
protein complex ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
CD48 antigen
Names
CD48 antigen
HM48-1
BCM1 surface antigen
SLAM family member 2
MRC OX-45 surface antigen
signaling lymphocytic activation molecule 2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007649.4NP_031675.1  CD48 antigen precursor

    See proteins identical to NP_031675.1

    Status: PROVISIONAL

    Source sequence(s)
    AC091521
    Consensus CDS
    CCDS15501.1
    UniProtKB/Swiss-Prot
    P18181
    Related
    ENSMUSP00000064241, ENSMUST00000068584
    Conserved Domains (3) summary
    smart00410
    Location:29110
    Blast Score: 99
    IG_like; Immunoglobulin like
    pfam00047
    Location:146195
    Blast Score: 77
    ig; Immunoglobulin domain
    cl11960
    Location:36124
    Blast Score: 149
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000067.6 

    Range
    171681421..171705257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496637.1XP_006496700.1  

    Conserved Domains (1) summary
    pfam00047
    Location:3988
    Blast Score: 78
    ig; Immunoglobulin domain
  2. XM_006496636.1XP_006496699.1  

    Conserved Domains (3) summary
    cd05741
    Location:36124
    Blast Score: 153
    Ig_CEACAM_D1_like; First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins
    smart00410
    Location:29110
    Blast Score: 101
    IG_like; Immunoglobulin like
    pfam00047
    Location:146195
    Blast Score: 79
    ig; Immunoglobulin domain

Alternate Mm_Celera

Genomic

  1. AC_000023.1 

    Range
    174538236..174561362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)