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    TC0439 adherence factor [ Chlamydia muridarum Nigg ]

    Gene ID: 1245792, updated on 15-Sep-2011
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    Summary

    Gene symbol
    TC0439
    Gene description
    adherence factor
    Locus tag
    TC0439
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Chlamydia muridarum Nigg (strain: MoPn)
    Lineage
    Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia
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    Genomic context

    Sequence :
    NC_002620.2 (526699..536376)

    NC_002620.2Genomic Context describing neighboring genes Neighboring gene adherence factor Neighboring gene adherence factor Neighboring gene phospholipase D family protein Neighboring gene hypothetical protein

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Read TD, et al. Nucleic Acids Res, 2000 Mar 15. PMID 10684935.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    General protein information

    Names
    adherence factor
    NP_296816.1
    • similar to GP:6013469; identified by sequence similarity
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002620.2

      Range
      526699..536376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_296816.1 adherence factor [Chlamydia muridarum Nigg]

      UniProtKB/TrEMBL
      Q9PKM6
      Conserved Domains (6) summary
      pfam11996
      Location:2171 – 3100
      Blast Score: 3433
      DUF3491; Protein of unknown function (DUF3491)
      cl04145
      Location:1451 – 1629
      Blast Score: 376
      Peptidase_C58; Yersinia/Haemophilus virulence surface antigen
      pfam04488
      Location:449 – 539
      Blast Score: 164
      Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
      pfam12918
      Location:188 – 250
      Blast Score: 175
      TcdB_N; TcdB toxin N-terminal helical domain
      pfam12919
      Location:281 – 811
      Blast Score: 1491
      TcdA_TcdB; TcdA/TcdB catalytic glycosyltransferase domain
      pfam12920
      Location:1798 – 2002
      Blast Score: 100
      TcdA_TcdB_pore; TcdA/TcdB pore forming domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AE002160.2 AAF39293.1
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    Additional Links

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